Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1316 ATGGATCATCAGTCCCTCCTCAGATTTGATGTGAGTCCTAGCCGTGAACCAATCCTACAACAACAGTTACAACAAGACATTGACATGCCTTCTTTGTTCGTTGTTGATTTTGAATTCATCAACACAATTTTACCATGGGATTCTTTTCGTAATAACAATGAGTACGATGAAACAGACAATGTAACTCTTACGATTCCTACTGAAATCTTATGTAATTGTACGGATGACGATCATAAAAGTGTTATGTATGACATATTTTCCTTCGTGTCTACCAACATATTAGACACGATTTTACCGGAATTGGAAGAATGTGCTAAACAAATGGTTGCAGAGAATCACGAAGAACGTGAATTTTTGGAGATGGATTTGTTGATTCATATTAGTACAATAGACATGGTAGGTGAAGAAAATCAGAATGATAATGGTCAAGCTCAACAAATTGTGGATTTGTTGGAGAAATATTCAATTGATTATCTTTCTTCCGACTCGACTACAGAACAATGTTCAATTTGTTTGGAGGAGTTTGACACCAGCTCAGAACCTGTTTCTACCAAATGCTCGCATGTTTTTCATAAAGAGTGCATGGTTCCTTGGATCCAAAGATGCATCGACCGTTCATCTCTTTATTCTTGTCCATTATGTCGAGGTCAAATAATATGA 660 0.3652 MDHQSLLRFDVSPSREPILQQQLQQDIDMPSLFVVDFEFINTILPWDSFRNNNEYDETDNVTLTIPTEILCNCTDDDHKSVMYDIFSFVSTNILDTILPELEECAKQMVAENHEEREFLEMDLLIHISTIDMVGEENQNDNGQAQQIVDLLEKYSIDYLSSDSTTEQCSICLEEFDTSSEPVSTKCSHVFHKECMVPWIQRCIDRSSLYSCPLCRGQII* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1316 219 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 64 215 - -
Tpr5g1316 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 219 IPR013083 -
Tpr5g1316 219 Pfam Ring finger domain 167 215 IPR001841 -
Tpr5g1316 219 ProSiteProfiles Zinc finger RING-type profile. 168 215 IPR001841 -
Tpr5g1316 219 SMART ring_2 168 214 IPR001841 -
Tpr5g1316 219 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 64 215 - -
Tpr5g1316 219 SUPERFAMILY RING/U-box 167 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1316 Tpr-Chr5 25738664 25739323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1316 119 219 C3H Transcription Factor Family AT1G49850 28.713 3.08e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1316 - K22378 mtr:MTR_5g006240 201.445