Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1310 ATGGGAGGTTGCTGTTGCTCTGCCAGAAAACCTCATCTGCATGGAACTCCGGTGTATTACTATTGTCCACCGATTTTAGAAGAGCGCGACACTTTAACCTCTACGGATGTTACGACCGATTCACTCACTGCTGGATTGTTGGTAGGCTTGAATGTGGAAGAATCCACACCTGATACTTACCAGTCTCCTCCTGCACCTCTGCCTTATGATGTGGTCTTGGGAGGTACAGCGTCGACAGACTCTGAGTCAGGAAAAGACACTGTTGTTAGTGGTAGTAGTTTTGAAACTTTAATTACAGAAGATAAAGATATTGAAGAATCAGACCCTAAAGGTCAAGCTAAATCTGCATCAATATCTCCAAGCAAAGCAGAACTGTGGAAATCAAATGAACCTCATTCATTGGTGATAGAAGAAGAGGACGGCTGTCCAATTTGCCTTGAAGAATATGATGTTGAGAATCCTAAAACTGTTACAAAATGTGAACACCACTTTCACCTAGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGATCAGGAGATGATATTTGATGAGGCATTGGACTAG 582 0.4244 MGGCCCSARKPHLHGTPVYYYCPPILEERDTLTSTDVTTDSLTAGLLVGLNVEESTPDTYQSPPAPLPYDVVLGGTASTDSESGKDTVVSGSSFETLITEDKDIEESDPKGQAKSASISPSKAELWKSNEPHSLVIEEEDGCPICLEEYDVENPKTVTKCEHHFHLACILEWMERSDSCPICDQEMIFDEALD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1310 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 192 - -
Tpr5g1310 193 Pfam Ring finger domain 142 182 IPR001841 -
Tpr5g1310 193 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Tpr5g1310 193 SUPERFAMILY RING/U-box 132 189 - -
Tpr5g1310 193 SMART ring_2 142 182 IPR001841 -
Tpr5g1310 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 189 IPR013083 -
Tpr5g1310 193 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 192 - -
Tpr5g1310 193 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1310 Tpr-Chr5 25692939 25698296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1310 1 193 C3H Transcription Factor Family AT4G00335 55.959 4.88e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1310 - - gmx:100804435 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1976 6 21418213 21421516 Tpr5g1310 5 25692939 25698296 PCT