Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1307 ATGATTGATGATGGACAGAAGCCTGATTTATACAAGCTGTTGAGTGTGGTTGAGGGGAAAGGTGGGTTTGAAGCTGTTTGCAATGGTGAGTTGTGGGATTTAGTTGGGGAAGAATGTGGGTTAGGTGTGAATGTTGGTTCATCTGTGAAACTTGTTTTTAGTAAGTATAAGAGTGTTTTGGAGTCATGTTTGAAGAAATCTGGTGGTGGTAAGGTGTCTGATGAGTGTGGTTTGATGGGGTTTGAGGCTGATGTGAAAGAGTTGTTGTCGGGTCAGGCTGAGATTGCGGTGGCTGGAAATGGGGTTAAGGCTGGAGTTGATGGTGCTAATGAGGTGAAGAGTGGGGAGAAAGATGTTGGAAAGTTGGGTGAGGGTAATGGTGATGCAATGCAGGGAGTGGAAGTGGCTGATGGAGGGAAAAAGTCTAATGAGACAACAGCTGATGTATGGGGTCTTAAGAGGAAGAAAGAGTCTTTGTGTGATTTGATGAATTGGGTTACCCGTGCCGCGAATAACCCTTGTGATCCTGAAATTGGTTTGTTGCCTGAAAAGTCGAAATGGAAGTCTTACAGTAATCAGGAGGCTTGGAAGCGGGTTTTGCTGTATCGAGAGGCTGTGTTTCACAAGAAACAGTCAAGCATTGAACAGCAGAATTGGCAGAGTCAGAAGATGCACCCTTCCATGTATGATGATCCCGCTCCGACGACCTACAATCTTAGGGAGAGGGTGAAACGTGACAAGAAACAATCATTTGAAAAACAAAAACCAGGTTCTCAAAGCTCGTCAGGAAATTCGGACAGAACCTCAAGTCCTCGTGCTGTTGATTCCGCGACATCAAAGCGCATCCTTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAGTGGACTGGTCCAATTCTGGAAAGTGATCCTAAGTGGCTCGGGACCCAAATATGGCCATTAGTAGCAGCTAATCCTCGATTTCTTATTGAAAGGGATCCTATAGGAAAGGGACGACAAGATTCATGTGGCTGTGCAGTTCCAAGATCTGTCGAATGTGTCAGATTCCACATTGCTGAAAGAAAGGATAAAATTAAGCTGGAGTTAGGCATGGCTTTTTACTACTGGGATTTCGATAAAGTCGGTGAAGATGTTCGACGTTCGTGGACCTATGAAGATGAGAAGAAATTCTGGGAAGTGATACAGTCAAACCCTCCATCATCTGAAAGATATTTCTGGGATTACATTTTCCGAACATTTCCTAACAAGAACAGGGAAGTTTTGGTCAGCTACTACTTTAATGTCTATCTCTTGCATCGCATAGCATACCACAGCAGGCATACACCTGATGACTTCGATAGCGATGACGATGAATCACAATCTGCATTGAGGAATGTTTTTGGACATCAGACACAGAATTCGTTATTGAGCCCCAAGAAGCCAGCTAAGAAGGGAAAATAG 1440 0.4437 MIDDGQKPDLYKLLSVVEGKGGFEAVCNGELWDLVGEECGLGVNVGSSVKLVFSKYKSVLESCLKKSGGGKVSDECGLMGFEADVKELLSGQAEIAVAGNGVKAGVDGANEVKSGEKDVGKLGEGNGDAMQGVEVADGGKKSNETTADVWGLKRKKESLCDLMNWVTRAANNPCDPEIGLLPEKSKWKSYSNQEAWKRVLLYREAVFHKKQSSIEQQNWQSQKMHPSMYDDPAPTTYNLRERVKRDKKQSFEKQKPGSQSSSGNSDRTSSPRAVDSATSKRILVGPNHQAEVPEWTGPILESDPKWLGTQIWPLVAANPRFLIERDPIGKGRQDSCGCAVPRSVECVRFHIAERKDKIKLELGMAFYYWDFDKVGEDVRRSWTYEDEKKFWEVIQSNPPSSERYFWDYIFRTFPNKNREVLVSYYFNVYLLHRIAYHSRHTPDDFDSDDDESQSALRNVFGHQTQNSLLSPKKPAKKGK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1307 479 ProSiteProfiles ELM2 domain profile. 280 313 IPR000949 -
Tpr5g1307 479 CDD ARID 4 56 - -
Tpr5g1307 479 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 103 - -
Tpr5g1307 479 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 139 477 - -
Tpr5g1307 479 Gene3D - 1 71 IPR036431 GO:0003677
Tpr5g1307 479 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 103 - -
Tpr5g1307 479 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 139 477 - -
Tpr5g1307 479 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Tpr5g1307 479 SMART ELM2_2 282 333 IPR000949 -
Tpr5g1307 479 MobiDBLite consensus disorder prediction 460 479 - -
Tpr5g1307 479 MobiDBLite consensus disorder prediction 244 288 - -
Tpr5g1307 479 SUPERFAMILY ARID-like 6 56 IPR036431 GO:0003677
Tpr5g1307 479 MobiDBLite consensus disorder prediction 254 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1307 Tpr-Chr5 25649814 25653875 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr5g1307 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1307 - - mtr:MTR_8g028905 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1979 6 21439879 21445620 Tpr5g1307 5 25649814 25653875 PCT