Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1305 ATGCAATCCGGCGGTGGTGGACCTGGCCGGACGGCGGGGCGGGCGTCGACATCGTCGGCAGCTGCTTCGCCGTCTTCTTCTTCTTCGGCATCACAGTTAGGGTTTGAATCTTTGCAGCAGCAGCAGCAGCAGCAACATCAACAGCAGCAACTGCAGCAGCAGATAGGTTCTAGACAGTCATTGCAACAGCAACTGCTTAGAAAACCTGAAGGGAATGAAGCATTCTTAGCTTATCAAGCGGGGCGTCAAGGTGCATTTGGGAGTAACAATTTCTCACCTCCTAATGCTATGAAAATGCCCCAGCAGTCTCAAAAGTTCATTGGTTTAGGTCAACAGGGTTCCAACCAAGATGCCCAGCTCAGAGGTCAAGGTAGCGAGCAGCAGCAAATGTTAAACCCTGTGCACCAAGCGTACCTTCAATATGCTTTCCAGGCTGCGCAACAAAAGCAGCCTGCTTTGGGAATTCATCCGCAGCAGCATGCTATGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGTATGGGGAATCTGAAAATGCAGGACATTATGTCAGTGCAGGCAATGAATCAAGCTCAAGGATCGTCTTCTAGGAATTCATCTGAACATGTTTCCCGTGGAGAAAAGCCGATGGAGCAAGGACAGCAGATAAGACCTATTCAAGCACCAGAAGCACAGCAAAGCAACCAAAATGTAATGAACAGCCAGATTGCAGTAGCTGCTCAATTGCAGGCAATGCAGGCATGGGCACGTGAAAATAATATCGATTTATCACATCCTACGAATGCAAATTTAATGGCAAAGCTCATTCCAATGATGCAGTCAAGGATGGTCATACAACCACCAAAGGCCACCGAGAGCAACATTGGTGCACATTCGTCACCTGTCCCTGTTTCGAAGCAGCAGGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCAGCACATGCTAATTCATCAAGTGACGTGTCTGGACAGTCAGGTTCTTCCAAAGCCAGACATACTGTTCCCCCCAGCCATCTTGGCTCAGCAACAAATGCTGGTCACTCCAGTGACATGACCATGCAACAAATCAATGTTCACGGTAGAGAGTCTCAAGCTCCTTCGAGGCAACAAGTAAAACCTGGAAATGGAATGCCCTCTATGCATTCTCAGCAATCTTCTGCAGCCATGAACTTAGGTGCAGCAGACCGTCCTTTGAATGCAAAAGTTTCATCTTCTGGTTCAGAGCCTCCTCAAAATCAGTATATCAGGCAGTCAAACCAATCTACTACACAGGTTGGAGCTCCAACAAAAGAAGGGGGTTCGGGAAATTATGCCAAATCTCAAGGTGCACCAGCTCAGACACCTGAGCGGCAAAGTGCATTTACCAAACAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGATAAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCAAGCTATCACTCCACCGCCTCTTGAGATGCAGACAAAACAACCAAACCATCCTGCAGGAGGACAAAATCAAGTCAAGTCTGCTGGTAATATTGTTGTAGAACAACCACGACATGCTGAGGCCAATGCCAAAGAATCACAATCTATTTCTGCTGTTAATGGACACAGCTCTGTAAAGCAGGAATCCTTTTCAAGAGATGACAAATCTGCTCCACCACCAGTTCATACTCAAGCTGTTATGCCATCTATATCAAAGGAATCTGCTTCGACATCATCTGCAGGAAAGGAAGAGCAGAAAACAATCGGATCCTCTTTTAAGCAAAAGCAGGACAGTGATCATGGAAATAACAGTACTCCTGTTAGAAATGAGTTGGCATTAGATCGGGGGAAGACTATTGTATCACAGGCCCCTGTATCTGACATGCTACAAATTACAAAACCTGCACAAGCAAACACTGCTTCTCAGCCAAAGGATGTAGGACCGACCAAAAAATATCATGGACCTCTGTTTGATTTTCCTTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCAATGATGGTAAACAACAGCAATAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGTGCAGAAGTACTGAGCAAGAAGCGGACAGAAAATTTAAAGAAGATTGAAGGTTTGCTGTCTGTGAACTTGGAGAGGAAACGAATTAGACCTGACCTTGTGTTGAGACTGCAAATTGAAGAGAAAAAGCTTCGTCTCTTAGATGTTCAGGCACGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTAGGCTGTGTGAACGTCAGCGTGTGGAACTTGTTAGACAAGTGCAGGCATCTCAGAGAGCTGCAAGGGAGAAGCAACTCAAATCTATATTTTTATGGCGTAAGAAACTTCTTGAGGCGCACTGGGCAATTCGTGACGCCCGTACTGCCCGCAACAGGGGGGTGGGTAAATACCATGAGAGGATGTTGCGGGAATTCTCAAAACGTAAAGATGACGACCGAAGCAAAAGGTTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCCGGGTGATGCAGCAGAGAGATATGCTGTTCTTTCATCTTTCTTAAGCCAGACGGAAGAGTATCTACATAAATTAGGAAGCAAGATAACAGCTGCCAAAAATCAACAGGAAGTAGAAGAGGCAGCAAAGGCAGCTGCGGATGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCCGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTTGCACATGCGGTGAATGAAATGGTCATAAGACCACCATCCCTATTGCGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTGTCTTTGTACAACAACAAATTAAACGGAATTTTGGCAGACGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGCCCACATCTCATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTACCATCTGTGGCGTGCATTTTTTATGCTGGAGGGAAGGATTATCGAACAAAATTATTTCATCAAGTTTCTGCTCTGAAGTTTAATGTCTTGGTTACTACTTATGAGTTCATCATGTATGACCGGGCAAAACTTTCAAAAATTGATTGGAAGTATATTGTGATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTAGCACGCGATCTTGATAGGTATCGTTGTCAACGACGCCTGCTTTTGACAGGAACGCCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGACTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACTCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGATCACTACCGCCGAAGGACTCGATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTATGATTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCCGAGGATGAGGAACGGAAGCTTCAGAGGAATCCTAACTACCCGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACTTGCAATCATCCGTTGCTTAATTACCCATTCTTCAGTGACTTATCTAAAGAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACACCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATGGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTGTTATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAAGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCAAGTCATCAGAAAGAGGATGAAATGAGAGGTGGAGGCACTGTTGATCTGGATGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGGAATAATATTCAGCAATATAAGATAGATATGGCCGATGAGGTAATTAATGCTGGACGTTTCGATCAAAGAACAACGCATGAAGAAAGGCGGTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCATTGCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAACTGGACTGGATTGACGAGATGACACGTTACGATCACATCCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATGCTGCTATTGCTGCTTTATCAAAAAGACCATTAAAGAAAACTTTATTGGGTGGCAGTGCAGACATTGAGACAAGTGAACTTGGTTCAGAAAGGAAAAGAGGGAGACCCAAAAAGCATACTAGTTATAAAGAGCTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATGCAAATGAAGAAGGGGAAATAGGAGATTTCGAAGATGATGGGTATAGTGGAGCTGATGGAGCTCAGCCCATTGCTAAAGATCAGTTGGAAGATGGTAGATATGAATTTCCTCCATCTCTAGAAATTGCCAGTAATCAGGTGGTTCAAGAAGCTGGTTCCTCTGGCTCTGGATCATCCGCAGCAGACTGTCAAAAATTGAAACAGATAGTATCACCATCAATTTCTTCTCAGAAATTTGGTTCCCTGTCTGCATTAGATGCCCGACCAGGTTCTGCTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCCGTTGATTCCCACATGGAGCATCAGCAGTCTGAAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGACCTGAAGAAAAGTCTGGTGGTGAAATGACACCTCGTTTGTCAGTTCTAGCAGACCGTAAATATCAAGCACAGTTGAGGACTGACCTAGAATCAAAATCACACGTAGATTCCAATGCCAGCAGGAATGATCAAAATTCTTCAATAAAAAATAAGCGAACTTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATGGCTCACCAAAGCCTACTCGTTTGAATAGCATATCTGCTCCTTCAGAGGATGGTGGTGAATATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCTTCTGCTCATGTCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTCATTAGCAAGCTCCAAAGGAGGATAGACAAGGAAGGCCAACAAATTGTACCTCTATTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGCTACAGTGGTGGATCTGGGAATAGTCTGTTGGATTTACGAAAGATTGATCAGCGGATTGATAAATTGGAGTATAATGGAGCAACGGATCTTGTATTTGATGTGCAGCTCATGTTAAAGAGTGCGATGCATTATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTCGATATATTGAAAATTGCATTTCCCGATACCGACTTCCGAGATGCAAAAAGTGCACTCTCTTTCACTGGTCCAGTTTCTGTCACCACCAATGTATCGTCTCCAAGGCAAGTGGCTGTCGGCCAAAGCAAGCGGCACAGGCTGATAAACGAGGTGGACATCGATCCACACCCTCCACAGAGACCACTGCAACGCGGATCAGGTTCTAGCGGCGAAAACAGCAGGATTAGAGTCCGTGTGCCACCAAAGGAATCAAGATCCGGATACGGTAGCGGTAGCAGCATGCGAGAGCAACATCAGGAGCAGGATGATTCTCCTCCGCTGCTCACTCATCCAGGTGAACTTGTCGTATGTAAGAAAAGAAGAAATGATCGGGAGAAATCATTGGCCAAACCTCGGACTGGTCCCGTTTCACCATCTATGAGAAGTCCCGGGTCCGGTTCAGTCCCTAAAGATGTTAGATTATCTCAACAGACTCAAGGATGGGTTGGCCAACCATCTTCTCAACAACCAAATGGGTCAGTTGGATGGGCTAATCCTGTAAAGAGACTAAGAACAGATTCTGCTAAGAGGAGACCAAGTCATATGTAA 6615 0.4372 MQSGGGGPGRTAGRASTSSAAASPSSSSSASQLGFESLQQQQQQQHQQQQLQQQIGSRQSLQQQLLRKPEGNEAFLAYQAGRQGAFGSNNFSPPNAMKMPQQSQKFIGLGQQGSNQDAQLRGQGSEQQQMLNPVHQAYLQYAFQAAQQKQPALGIHPQQHAMMGMLNPASVKDQEMRMGNLKMQDIMSVQAMNQAQGSSSRNSSEHVSRGEKPMEQGQQIRPIQAPEAQQSNQNVMNSQIAVAAQLQAMQAWARENNIDLSHPTNANLMAKLIPMMQSRMVIQPPKATESNIGAHSSPVPVSKQQVNSPAVASESSAHANSSSDVSGQSGSSKARHTVPPSHLGSATNAGHSSDMTMQQINVHGRESQAPSRQQVKPGNGMPSMHSQQSSAAMNLGAADRPLNAKVSSSGSEPPQNQYIRQSNQSTTQVGAPTKEGGSGNYAKSQGAPAQTPERQSAFTKQQLHVLKAQILAFRRIKKGEGTLPQELLQAITPPPLEMQTKQPNHPAGGQNQVKSAGNIVVEQPRHAEANAKESQSISAVNGHSSVKQESFSRDDKSAPPPVHTQAVMPSISKESASTSSAGKEEQKTIGSSFKQKQDSDHGNNSTPVRNELALDRGKTIVSQAPVSDMLQITKPAQANTASQPKDVGPTKKYHGPLFDFPFFTRKHDSFGSSMMVNNSNNLSLAYDVKDLLFEEGAEVLSKKRTENLKKIEGLLSVNLERKRIRPDLVLRLQIEEKKLRLLDVQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELVRQVQASQRAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVGKYHERMLREFSKRKDDDRSKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAADAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPRDSSSVNKYYNLAHAVNEMVIRPPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVACIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRAKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPTQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTVDLDDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRYDHIPKWIRANTKEVNAAIAALSKRPLKKTLLGGSADIETSELGSERKRGRPKKHTSYKELEDEDLEYSEASSEERNGYANEEGEIGDFEDDGYSGADGAQPIAKDQLEDGRYEFPPSLEIASNQVVQEAGSSGSGSSAADCQKLKQIVSPSISSQKFGSLSALDARPGSASKRMTDELEEGEIAVSVDSHMEHQQSESWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSGGEMTPRLSVLADRKYQAQLRTDLESKSHVDSNASRNDQNSSIKNKRTLPSRRVANTSKLHGSPKPTRLNSISAPSEDGGEYSRESWEGKPINSSGSSAHVSRMTEIIQRRCKNVISKLQRRIDKEGQQIVPLLTDLWKRIENSGYSGGSGNSLLDLRKIDQRIDKLEYNGATDLVFDVQLMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFRDAKSALSFTGPVSVTTNVSSPRQVAVGQSKRHRLINEVDIDPHPPQRPLQRGSGSSGENSRIRVRVPPKESRSGYGSGSSMREQHQEQDDSPPLLTHPGELVVCKKRRNDREKSLAKPRTGPVSPSMRSPGSGSVPKDVRLSQQTQGWVGQPSSQQPNGSVGWANPVKRLRTDSAKRRPSHM* 2205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1 57 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 527 610 - -
Tpr5g1305 2204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 968 1213 IPR027417 -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 404 458 - -
Tpr5g1305 2204 Pfam QLQ 457 491 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 2123 2139 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1603 1646 - -
Tpr5g1305 2204 PANTHER SNF2/RAD54 HELICASE FAMILY 33 2136 - -
Tpr5g1305 2204 SMART bromo_6 1902 2017 IPR001487 GO:0005515
Tpr5g1305 2204 PANTHER ATP-DEPENDENT HELICASE BRM 33 2136 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Tpr5g1305 2204 SMART QLQ_2 456 493 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr5g1305 2204 SMART helicmild6 1340 1424 IPR001650 -
Tpr5g1305 2204 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1314 1491 IPR001650 -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1834 1878 - -
Tpr5g1305 2204 Gene3D - 1904 2029 IPR036427 GO:0005515
Tpr5g1305 2204 Coils Coil 738 758 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 192 220 - -
Tpr5g1305 2204 ProSiteProfiles QLQ domain profile. 457 493 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr5g1305 2204 Pfam Helicase conserved C-terminal domain 1313 1424 IPR001650 -
Tpr5g1305 2204 CDD SF2_C_SNF 1303 1434 - -
Tpr5g1305 2204 Pfam SNF2-related domain 987 1290 IPR000330 GO:0005524|GO:0140658
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1718 1810 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 285 458 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 285 394 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1603 1624 - -
Tpr5g1305 2204 CDD Bromodomain 1957 2012 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 530 547 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1757 1779 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1733 1750 - -
Tpr5g1305 2204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1554 IPR027417 -
Tpr5g1305 2204 SUPERFAMILY Bromodomain 1956 2015 IPR036427 GO:0005515
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 2147 2184 - -
Tpr5g1305 2204 Coils Coil 1530 1550 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 568 610 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 1824 1899 - -
Tpr5g1305 2204 MobiDBLite consensus disorder prediction 2041 2204 - -
Tpr5g1305 2204 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 996 1160 IPR014001 -
Tpr5g1305 2204 SMART ultradead3 980 1168 IPR014001 -
Tpr5g1305 2204 Gene3D - 1223 1433 IPR027417 -
Tpr5g1305 2204 Gene3D - 976 1222 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1305 Tpr-Chr5 25608792 25621330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1305 1005 1449 RAD5 or RAD16-like Gene Family AT1G02670 26.104 8.53e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr5g1305 SNF2_N 9.8e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1305 - - gmx:100807104 3327.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1305 5 25608792 25621330 Tpr5g1305 5 25608792 25621330 ECH