Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1301 AACTGTGGAGAAAGGGGTCATATGTCTTATGATTGCCCCAAGAAAGGAGATAGGTGTAAGAATTGTGGAAAGCTGGGCCACAAGACCGAAGTGTGTAGGACAAAAGTGGTGTGTTTCAACTGTGGTGAGGAAGGCCACAAGAGTCCGACTTGTAAGAAGCCCAAGAAGGTGATGGGCAAGGTGTTTGCTTTGAGTGGAGAGGATGCTAGCCTTGAGGACAATCTCATTAGAGGTACGTGTTTCATCTATAACACTCCTTTAATTGCGATTATAGATACGGGAGCGACGCATTCTTTTATTTCTTTGGATTGTGCGAAGCGTCTTAGTATTCCTTTAACGGATATGATGGGTAGGATGGAAATAGAAACTCCTGCTAATGGTTCAGTGATTACCCGACAAGTATGTCGTAACTGCCCCGTAACCATTTTTGGTAGGCATTTTGGTATGGATTTAGTGTGTATTCCACTTAGTGGTATGGATGTAATTTTTGGTATGAATTGGTTAATCTTTAATCGAATTCATATCAACTGTTGTGAGAAGGCCGTTGTTTTTCCGAAGCCGGAGGAGAACTTGCACTTGATGAGTGGAAAGGAAGTATCGGAAGCGTTGAAAGAACATGCCGAGATGTTCATGATGTTTGCATCATTGAAACTCGAAGGAGGAGTTAAGATAGAAGAGTTACCGATCGTTTGTGAATTCCCAGATGTGTTTCCGGATGACATATCTGACGTGCCTCCGAAGCGAGAGGTAGAGTTTTCTATCGACCTAGTACCTGGAACTAGCCCGATATCGATGGCGCCGTATCGAATGTCAGCGTCAGAGTTGAATGAATTGAAGAAGCAACTTGAAGAGCTGCTTGAGAAGAGGTTTGTTCGACCGAGTGTTTCGCCATGGGGAGCGCCAGTGTTGCTTGTGAAGAAGAAAGATGGAAGCATGAGATTATGTATAGACTATCGTCAGTTGAACAAAGTGACGATCAAGAATAAATAT 990 0.4333 NCGERGHMSYDCPKKGDRCKNCGKLGHKTEVCRTKVVCFNCGEEGHKSPTCKKPKKVMGKVFALSGEDASLEDNLIRGTCFIYNTPLIAIIDTGATHSFISLDCAKRLSIPLTDMMGRMEIETPANGSVITRQVCRNCPVTIFGRHFGMDLVCIPLSGMDVIFGMNWLIFNRIHINCCEKAVVFPKPEENLHLMSGKEVSEALKEHAEMFMMFASLKLEGGVKIEELPIVCEFPDVFPDDISDVPPKREVEFSIDLVPGTSPISMAPYRMSASELNELKKQLEELLEKRFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNKY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1301 330 SUPERFAMILY Acid proteases 74 175 IPR021109 -
Tpr5g1301 330 Gene3D Acid Proteases 83 200 IPR021109 -
Tpr5g1301 330 SUPERFAMILY Retrovirus zinc finger-like domains 18 55 IPR036875 GO:0003676|GO:0008270
Tpr5g1301 330 SMART c2hcfinal6 18 34 IPR001878 GO:0003676|GO:0008270
Tpr5g1301 330 SMART c2hcfinal6 37 53 IPR001878 GO:0003676|GO:0008270
Tpr5g1301 330 SMART c2hcfinal6 1 14 IPR001878 GO:0003676|GO:0008270
Tpr5g1301 330 Pfam Retroviral aspartyl protease 57 189 - -
Tpr5g1301 330 Coils Coil 268 288 - -
Tpr5g1301 330 ProSiteProfiles Zinc finger CCHC-type profile. 38 53 IPR001878 GO:0003676|GO:0008270
Tpr5g1301 330 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 229 317 - -
Tpr5g1301 330 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 78 189 - -
Tpr5g1301 330 Gene3D - 35 82 - -
Tpr5g1301 330 Gene3D - 1 34 - -
Tpr5g1301 330 CDD retropepsin_like 79 168 - -
Tpr5g1301 330 Pfam Zinc knuckle 37 53 IPR001878 GO:0003676|GO:0008270
Tpr5g1301 330 Pfam Zinc knuckle 1 14 IPR001878 GO:0003676|GO:0008270
Tpr5g1301 330 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 241 330 - -
Tpr5g1301 330 SUPERFAMILY DNA/RNA polymerases 229 330 IPR043502 -
Tpr5g1301 330 PANTHER RNA-DIRECTED DNA POLYMERASE HOMOLOG 229 317 - -
Tpr5g1301 330 PANTHER RNA-DIRECTED DNA POLYMERASE HOMOLOG 78 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1301 Tpr-Chr5 25531278 25532267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1301 1 69 C2H2 Transcription Factor Family AT5G20220 36.364 1.25e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1301 - - cam:101511211 355.14