Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1235 ATGGCCATGGAAACTGAGGCTGCCACCACTCCACACTTGGCGCTCTCTGATACAGACATCAACTGGGACAGGTTGGATAAGACTAGATTCCACATTATTGGTGCAATACTCTTCACAGCTCAATCAGCATTACTTCATCCAACAGCAGTGGTGAAGACAAGAATGCAAGTAGCTAGTTCAGGACTCTCTAACATGAAGGGAACCTCAGTGTTCACTCATATTTTGAGGAGTGATGGAATTCCTGGAATTTTTAGAGGTTTTGGAACTTCTGCTATTGGATCAATGCCTGGTAGGGTTTTAGCTCTTACATCTCTTGAGATGTCAAAGGATTTTATGTTGAAACACACTCAAGGTAGCGATATTCCAGAAGCATCGCGGATTGGCCTTGCAAATGGTGTTGCTGGCATGGTTTCAAATTTGGTATCTTGCGTTTACTTTGTGCCTTTGGATGTGATCTGCCAAAGGTTAATGGTTCAAGGTCTTCCGGGAACTACATGTTGTAGAGGACCATTTGATGTTATCCGTAGAGTAGTACATGCTGAGGGTTTTCGCGGCTTGTATAGAGGTTTTGGATTAACAGCTGTAACGCAATCTCCAGCATCTGCACTTTGGTGGGGATCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTAGATTACAAAGATGATATGGGGAAGAAGCCTTCACACGTGGAAATGGTGACAGTTCAGGCTACTGCTGGCATGGTGGCTGGTGCTTGTTCTTCTGTCATCACTACTCCCATAGATACTGTAAAAACACGACTTCAGGTTATGGACAACTATGGTTCTGGAAGACCATCAGTACTAAAGACAGCAAGAACTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGAGGGTTTGGACCAAGATTTTTGAACATGTCACTTTATGGAACAACTATGATTGTTACTTATGAACTGATAAAGAGATTATCGGTACAACCAAGTCTAAAGTCTTTTTCTTAA 993 0.426 MAMETEAATTPHLALSDTDINWDRLDKTRFHIIGAILFTAQSALLHPTAVVKTRMQVASSGLSNMKGTSVFTHILRSDGIPGIFRGFGTSAIGSMPGRVLALTSLEMSKDFMLKHTQGSDIPEASRIGLANGVAGMVSNLVSCVYFVPLDVICQRLMVQGLPGTTCCRGPFDVIRRVVHAEGFRGLYRGFGLTAVTQSPASALWWGSYGAAQHIIWRSLDYKDDMGKKPSHVEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTARTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQPSLKSFS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1235 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 111 IPR018108 -
Tpr5g1235 330 Pfam Mitochondrial carrier protein 237 321 IPR018108 -
Tpr5g1235 330 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Tpr5g1235 330 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Tpr5g1235 330 Gene3D Mitochondrial carrier domain 128 324 IPR023395 -
Tpr5g1235 330 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
Tpr5g1235 330 PANTHER OS01G0329400 PROTEIN 1 323 - -
Tpr5g1235 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Tpr5g1235 330 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 323 - -
Tpr5g1235 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1235 Tpr-Chr5 24563627 24567156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1235 17 320 Chloroplast and Mitochondria Gene Families AT5G15640 50.000 8.74e-105 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1235 K15121 - gmx:112997745 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1235 5 24563627 24567156 Tpr5g1235 5 24563627 24567156 ECH