Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr5g1232 | ATGGCAACAACAGAGGCAGCTTCTGCTGGGGTTGGTCCTAGATATGCACCGGATGATCCCTCGCTTCCGGCGCCGTGGAAAGGTTTGATTGATGGAGCTACTGGTTTGTTATACTATTGGAATCCTGATACTAATGTTACTCAGTATGAAAAGCCAACACCGTTGGCTCCGCCTGTGCCGGCGGCTTCTACGCCGAGCTTGGCGCCTATACCGGTGACTCAACAGCATGGGCAAGGGCAACAGATGATGCAACAACAGCAGGGGGGTCATTATGCTCAACAGCATGGTCAACAGATGCCGCAGCAGATGAGTCCTCATGTGGCGCAGGGTACTCAGCAGCCGAATTCTCAGGCTGCTCAACCTGTCCAGCAGCAGAATTCACAGATTTCACAGCCGGCGCAACAGCCAGGGTTACACCAAGGTAGACCACAGATGATGCAGCCTCAAGGGCAGCAGATGATGCAGTATCAAGGACAGCAATTTCAGCAGATGCATCAGATGCCTCCACAGCCGATTCATCCACAACAATTTGGGCAAGGAGGTACTCAAGATCACGGTTCGCATCTTGTGCAACCGCAAGCGCCCCAGTTTACTCCTCAGAACATGCATTATATGGGATATCAACAAAACATGGTTACACCTAGGCAACCTAACTCCCAGCAGATTCAACCAAATATGCACTCATCTGGGCAACCAAACCCCCAGCCTAATCAACATCCGCATAACATACATAACCAGCATTTTGAAAATCAACAAGATTTTAAAACAGCGATGCCAAAGATGGAGGAAGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCATCACAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAATAAAAACGTTCCTGCCGAAGTTAGTTCTGGTCAAGTTACTAATGCAAGTGTTAATCCTGCCCAACCACAACAATTTAGGGGCTATCCAGGAAGCATGCAACAGCCTAGCCCAACAATACAGTCACAGCAGGGTGGTTCTGATTTATATTACCAACAGGGTCCTAATCCTAATTTCCAAAACCAGATGAGCCCGGGAATAATGCATGGTCATCCATCCAATGTACATCCTGTTGCCCAAAAGATGGTACATGAGGACAATGTACATGGTAGAGCTGGAAATGACTATTACTATAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCAGATATGACTCAAATGCCGATTTCCCGAAATCCGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAATGTCCCCATTGGAAATGGAAGTGGTATTACTGTGAATGCTATGAGTAACATGTTCACTCCTCCAATAGGAGGACCTTCTCCTCTTTCAAGCAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCAGCAGCTGAATTATACTGTCAGCAACACGAAGTTACAGCAACGGGTGACAACATTCCACCACCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTACGTTCTGCGGGCTTCTCGAATCCAACACCAATACAGGCTCAAACATGGCCCATTGCCCTACAGGGTAGAGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTCAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGGTCTTCAGCTAAAGGAGTTAGATCGTGGGGCAGATATTGTTGTTGCCACACCTGGTAGGCTTAATGATATACTTGAAATGAAAAAAATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCCGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCCAGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGACGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCGCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTCAGATCTCAGGAACGGGGTTCTAAGATCATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAATCTCCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGTAGAACTGGAAGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGAGTCGTTTTGACTCTGGTAGTGGTGGTGGTGGGCGCTGGGAGAGTGGTGGTCGTGGAAATACGAGGGACAGTGGATTTGGTGGTCGTGGAGGCATGAGGGATGGTGGTGGCTTTGGTGGTCGTGGGGGCATGAGGGATGGTGGTGGCTTTGGGGCTCGCGGTGGAATGAGGGATGCAGCTGGTGGACAAGGTGGTAGAGGTGATTTCTTTCCTGGTAGAGGGGGCAACAGGGGTAGAGGATTTGGTGCTCCACGTGGGGGCAGTGTTGGTTGGGGTGGCAGGGGTGACCGCGGTGGTCCTAGTGATCGGTACATGGATGGTCGTGGACAAGGACGTGGACGGGGAAGATTCGACAACAGAAGAGATGTTCCGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGATAGAGTTCGAACGTGGGATATTAACAGAAGCAGCAGCAGGAGTAGAAGTAGAAGTAGGAGTAGGAGCTATAGCCGTAGTCGTAGTCCACGTCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGTAGTCGGAGTCCACGTCGGAGTCGTAGCCGTGGTCGTAGTTATAGCCGCAGCCGCAGCCCCAAACCTACAAGGCGTGTTAAGTCAAAATTTTCTGATAAGATTGATATTGTGGCACCTGAAGCAGGAGCTTCTGATCCTATACCTGGCAACACAGAAGGGAATTCTATTTTGGGGACAGAACATGTGGAGCAGCTACCTGTTGTGGGGAACACTGGCCCAAATAATCCAGAGGCTGTAGTGGACGTTAGTCATCAACCACCTTCTGATATTTGA | 3474 | 0.4807 | MATTEAASAGVGPRYAPDDPSLPAPWKGLIDGATGLLYYWNPDTNVTQYEKPTPLAPPVPAASTPSLAPIPVTQQHGQGQQMMQQQQGGHYAQQHGQQMPQQMSPHVAQGTQQPNSQAAQPVQQQNSQISQPAQQPGLHQGRPQMMQPQGQQMMQYQGQQFQQMHQMPPQPIHPQQFGQGGTQDHGSHLVQPQAPQFTPQNMHYMGYQQNMVTPRQPNSQQIQPNMHSSGQPNPQPNQHPHNIHNQHFENQQDFKTAMPKMEEAEFKNGSQVGFSPSQYQQRSALPVQNNKNVPAEVSSGQVTNASVNPAQPQQFRGYPGSMQQPSPTIQSQQGGSDLYYQQGPNPNFQNQMSPGIMHGHPSNVHPVAQKMVHEDNVHGRAGNDYYYNSNKEMPPMGRQQPDMTQMPISRNPQDMRIGNSPFQNNVPIGNGSGITVNAMSNMFTPPIGGPSPLSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTATGDNIPPPFMTFDSTGFPPEILQEVRSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVEVVAQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMSRFDSGSGGGGRWESGGRGNTRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGARGGMRDAAGGQGGRGDFFPGRGGNRGRGFGAPRGGSVGWGGRGDRGGPSDRYMDGRGQGRGRGRFDNRRDVPRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSYSRSRSPRRSWSRGRSRSYSRSRSPRRSRSRGRSYSRSRSPKPTRRVKSKFSDKIDIVAPEAGASDPIPGNTEGNSILGTEHVEQLPVVGNTGPNNPEAVVDVSHQPPSDI* | 1158 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr5g1232 | 1157 | CDD | SF2_C_DEAD | 715 | 844 | - | - | |
Tpr5g1232 | 1157 | MobiDBLite | consensus disorder prediction | 1038 | 1091 | - | - | |
Tpr5g1232 | 1157 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 567 | 850 | IPR027417 | - | |
Tpr5g1232 | 1157 | CDD | WW | 23 | 54 | IPR001202 | GO:0005515 | |
Tpr5g1232 | 1157 | Pfam | DEAD/DEAH box helicase | 520 | 690 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr5g1232 | 1157 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 20 | 54 | IPR001202 | GO:0005515 | |
Tpr5g1232 | 1157 | Gene3D | - | 471 | 705 | IPR027417 | - | |
Tpr5g1232 | 1157 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 496 | 524 | IPR014014 | GO:0003724 | |
Tpr5g1232 | 1157 | SMART | ww_5 | 21 | 54 | IPR001202 | GO:0005515 | |
Tpr5g1232 | 1157 | MobiDBLite | consensus disorder prediction | 987 | 1037 | - | - | |
Tpr5g1232 | 1157 | MobiDBLite | consensus disorder prediction | 214 | 236 | - | - | |
Tpr5g1232 | 1157 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 730 | 874 | IPR001650 | - | |
Tpr5g1232 | 1157 | MobiDBLite | consensus disorder prediction | 967 | 1157 | - | - | |
Tpr5g1232 | 1157 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 647 | 655 | IPR000629 | - | |
Tpr5g1232 | 1157 | Gene3D | - | 16 | 54 | - | - | |
Tpr5g1232 | 1157 | ProSitePatterns | WW/rsp5/WWP domain signature. | 26 | 52 | IPR001202 | GO:0005515 | |
Tpr5g1232 | 1157 | MobiDBLite | consensus disorder prediction | 875 | 927 | - | - | |
Tpr5g1232 | 1157 | MobiDBLite | consensus disorder prediction | 73 | 151 | - | - | |
Tpr5g1232 | 1157 | Pfam | Helicase conserved C-terminal domain | 727 | 835 | IPR001650 | - | |
Tpr5g1232 | 1157 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 287 | 959 | - | - | |
Tpr5g1232 | 1157 | SMART | ultradead3 | 515 | 718 | IPR014001 | - | |
Tpr5g1232 | 1157 | SMART | helicmild6 | 755 | 835 | IPR001650 | - | |
Tpr5g1232 | 1157 | Gene3D | - | 706 | 876 | IPR027417 | - | |
Tpr5g1232 | 1157 | Pfam | WW domain | 22 | 52 | IPR001202 | GO:0005515 | |
Tpr5g1232 | 1157 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 527 | 701 | IPR014001 | - | |
Tpr5g1232 | 1157 | SUPERFAMILY | WW domain | 14 | 54 | IPR036020 | GO:0005515 | |
Tpr5g1232 | 1157 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 | 287 | 959 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr5g1232 | Tpr-Chr5 | 24524271 | 24533060 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr5g1232 | 484 | 855 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.853 | 9.09e-66 | 226 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr5g1232 | K12823 | - | gmx:100807830 | 1308.89 |