Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1232 ATGGCAACAACAGAGGCAGCTTCTGCTGGGGTTGGTCCTAGATATGCACCGGATGATCCCTCGCTTCCGGCGCCGTGGAAAGGTTTGATTGATGGAGCTACTGGTTTGTTATACTATTGGAATCCTGATACTAATGTTACTCAGTATGAAAAGCCAACACCGTTGGCTCCGCCTGTGCCGGCGGCTTCTACGCCGAGCTTGGCGCCTATACCGGTGACTCAACAGCATGGGCAAGGGCAACAGATGATGCAACAACAGCAGGGGGGTCATTATGCTCAACAGCATGGTCAACAGATGCCGCAGCAGATGAGTCCTCATGTGGCGCAGGGTACTCAGCAGCCGAATTCTCAGGCTGCTCAACCTGTCCAGCAGCAGAATTCACAGATTTCACAGCCGGCGCAACAGCCAGGGTTACACCAAGGTAGACCACAGATGATGCAGCCTCAAGGGCAGCAGATGATGCAGTATCAAGGACAGCAATTTCAGCAGATGCATCAGATGCCTCCACAGCCGATTCATCCACAACAATTTGGGCAAGGAGGTACTCAAGATCACGGTTCGCATCTTGTGCAACCGCAAGCGCCCCAGTTTACTCCTCAGAACATGCATTATATGGGATATCAACAAAACATGGTTACACCTAGGCAACCTAACTCCCAGCAGATTCAACCAAATATGCACTCATCTGGGCAACCAAACCCCCAGCCTAATCAACATCCGCATAACATACATAACCAGCATTTTGAAAATCAACAAGATTTTAAAACAGCGATGCCAAAGATGGAGGAAGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCATCACAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAATAAAAACGTTCCTGCCGAAGTTAGTTCTGGTCAAGTTACTAATGCAAGTGTTAATCCTGCCCAACCACAACAATTTAGGGGCTATCCAGGAAGCATGCAACAGCCTAGCCCAACAATACAGTCACAGCAGGGTGGTTCTGATTTATATTACCAACAGGGTCCTAATCCTAATTTCCAAAACCAGATGAGCCCGGGAATAATGCATGGTCATCCATCCAATGTACATCCTGTTGCCCAAAAGATGGTACATGAGGACAATGTACATGGTAGAGCTGGAAATGACTATTACTATAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCAGATATGACTCAAATGCCGATTTCCCGAAATCCGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAATGTCCCCATTGGAAATGGAAGTGGTATTACTGTGAATGCTATGAGTAACATGTTCACTCCTCCAATAGGAGGACCTTCTCCTCTTTCAAGCAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCAGCAGCTGAATTATACTGTCAGCAACACGAAGTTACAGCAACGGGTGACAACATTCCACCACCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTACGTTCTGCGGGCTTCTCGAATCCAACACCAATACAGGCTCAAACATGGCCCATTGCCCTACAGGGTAGAGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTCAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGGTCTTCAGCTAAAGGAGTTAGATCGTGGGGCAGATATTGTTGTTGCCACACCTGGTAGGCTTAATGATATACTTGAAATGAAAAAAATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCCGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCCAGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGACGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCGCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTCAGATCTCAGGAACGGGGTTCTAAGATCATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAATCTCCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGTAGAACTGGAAGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGAGTCGTTTTGACTCTGGTAGTGGTGGTGGTGGGCGCTGGGAGAGTGGTGGTCGTGGAAATACGAGGGACAGTGGATTTGGTGGTCGTGGAGGCATGAGGGATGGTGGTGGCTTTGGTGGTCGTGGGGGCATGAGGGATGGTGGTGGCTTTGGGGCTCGCGGTGGAATGAGGGATGCAGCTGGTGGACAAGGTGGTAGAGGTGATTTCTTTCCTGGTAGAGGGGGCAACAGGGGTAGAGGATTTGGTGCTCCACGTGGGGGCAGTGTTGGTTGGGGTGGCAGGGGTGACCGCGGTGGTCCTAGTGATCGGTACATGGATGGTCGTGGACAAGGACGTGGACGGGGAAGATTCGACAACAGAAGAGATGTTCCGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGATAGAGTTCGAACGTGGGATATTAACAGAAGCAGCAGCAGGAGTAGAAGTAGAAGTAGGAGTAGGAGCTATAGCCGTAGTCGTAGTCCACGTCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGTAGTCGGAGTCCACGTCGGAGTCGTAGCCGTGGTCGTAGTTATAGCCGCAGCCGCAGCCCCAAACCTACAAGGCGTGTTAAGTCAAAATTTTCTGATAAGATTGATATTGTGGCACCTGAAGCAGGAGCTTCTGATCCTATACCTGGCAACACAGAAGGGAATTCTATTTTGGGGACAGAACATGTGGAGCAGCTACCTGTTGTGGGGAACACTGGCCCAAATAATCCAGAGGCTGTAGTGGACGTTAGTCATCAACCACCTTCTGATATTTGA 3474 0.4807 MATTEAASAGVGPRYAPDDPSLPAPWKGLIDGATGLLYYWNPDTNVTQYEKPTPLAPPVPAASTPSLAPIPVTQQHGQGQQMMQQQQGGHYAQQHGQQMPQQMSPHVAQGTQQPNSQAAQPVQQQNSQISQPAQQPGLHQGRPQMMQPQGQQMMQYQGQQFQQMHQMPPQPIHPQQFGQGGTQDHGSHLVQPQAPQFTPQNMHYMGYQQNMVTPRQPNSQQIQPNMHSSGQPNPQPNQHPHNIHNQHFENQQDFKTAMPKMEEAEFKNGSQVGFSPSQYQQRSALPVQNNKNVPAEVSSGQVTNASVNPAQPQQFRGYPGSMQQPSPTIQSQQGGSDLYYQQGPNPNFQNQMSPGIMHGHPSNVHPVAQKMVHEDNVHGRAGNDYYYNSNKEMPPMGRQQPDMTQMPISRNPQDMRIGNSPFQNNVPIGNGSGITVNAMSNMFTPPIGGPSPLSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTATGDNIPPPFMTFDSTGFPPEILQEVRSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVEVVAQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMSRFDSGSGGGGRWESGGRGNTRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGARGGMRDAAGGQGGRGDFFPGRGGNRGRGFGAPRGGSVGWGGRGDRGGPSDRYMDGRGQGRGRGRFDNRRDVPRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSYSRSRSPRRSWSRGRSRSYSRSRSPRRSRSRGRSYSRSRSPKPTRRVKSKFSDKIDIVAPEAGASDPIPGNTEGNSILGTEHVEQLPVVGNTGPNNPEAVVDVSHQPPSDI* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1232 1157 CDD SF2_C_DEAD 715 844 - -
Tpr5g1232 1157 MobiDBLite consensus disorder prediction 1038 1091 - -
Tpr5g1232 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 850 IPR027417 -
Tpr5g1232 1157 CDD WW 23 54 IPR001202 GO:0005515
Tpr5g1232 1157 Pfam DEAD/DEAH box helicase 520 690 IPR011545 GO:0003676|GO:0005524
Tpr5g1232 1157 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Tpr5g1232 1157 Gene3D - 471 705 IPR027417 -
Tpr5g1232 1157 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 496 524 IPR014014 GO:0003724
Tpr5g1232 1157 SMART ww_5 21 54 IPR001202 GO:0005515
Tpr5g1232 1157 MobiDBLite consensus disorder prediction 987 1037 - -
Tpr5g1232 1157 MobiDBLite consensus disorder prediction 214 236 - -
Tpr5g1232 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 874 IPR001650 -
Tpr5g1232 1157 MobiDBLite consensus disorder prediction 967 1157 - -
Tpr5g1232 1157 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 647 655 IPR000629 -
Tpr5g1232 1157 Gene3D - 16 54 - -
Tpr5g1232 1157 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Tpr5g1232 1157 MobiDBLite consensus disorder prediction 875 927 - -
Tpr5g1232 1157 MobiDBLite consensus disorder prediction 73 151 - -
Tpr5g1232 1157 Pfam Helicase conserved C-terminal domain 727 835 IPR001650 -
Tpr5g1232 1157 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 287 959 - -
Tpr5g1232 1157 SMART ultradead3 515 718 IPR014001 -
Tpr5g1232 1157 SMART helicmild6 755 835 IPR001650 -
Tpr5g1232 1157 Gene3D - 706 876 IPR027417 -
Tpr5g1232 1157 Pfam WW domain 22 52 IPR001202 GO:0005515
Tpr5g1232 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 527 701 IPR014001 -
Tpr5g1232 1157 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Tpr5g1232 1157 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 287 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1232 Tpr-Chr5 24524271 24533060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1232 484 855 Eukaryotic Initiation Factors Gene Family AT3G19760 34.853 9.09e-66 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1232 K12823 - gmx:100807830 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1232 5 24524271 24533060 Tpr5g1232 5 24524271 24533060 ECH