Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1194 ATGGAAGTAAAAGGAAGTGTAATTAGCAACTCAAACATCACCATGCTCCAAAGTGAAGATGATGAGTTGGATCTTCGACGAGGTCCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCACGGTGAAGGTCGATGGAATACTCTTGCTCATTCCGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTAGACGCGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCAAAAATTGCTCAATATTTGCCGGGAAGAACTGACAACGAGATCAAGAATTATTGGAGAACGCGTGTTCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAACAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGCTAGTGGAGCGAATCCAAGCCGCTGCATCCACCTCTGTTGCCACAGCCACCACCACTAATAATTATGGTTCTCCAAGCGTTACAACAACGGTCACCACCAACAATCATCCGACATACATCCATAACAACAATTTTGAGGGTCATACGAATATGATGTTAACTCCAACAATTATGAACAACAACAATAACTTATATGGTTCACAAGTAACACAAAGTCATACTCCAGACAATAGTAGCAATGGCGCGGCTGCATCATCAGATTCGTTTGGGACACAAGTTTCGCCTGTCTCGGATTTGACTCAAGACTACTACAATGTCGCGGTTGGTAGTAACAATGGTAACAATAACCCTAATTCTGATTATTACCAACAATTTGGCTTTGATTGCATCACTAGCCCTTCAGGTTTGTTCCCTCAAATGGATTTCAATTCCATGGAACCAAACACTCCATGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTGCAACAACTCAATGACAACATGTGA 987 0.4205 MEVKGSVISNSNITMLQSEDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLAHSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSVATATTTNNYGSPSVTTTVTTNNHPTYIHNNNFEGHTNMMLTPTIMNNNNNLYGSQVTQSHTPDNSSNGAAASSDSFGTQVSPVSDLTQDYYNVAVGSNNGNNNPNSDYYQQFGFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLLQQLNDNM* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1194 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Tpr5g1194 328 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Tpr5g1194 328 Gene3D - 84 147 - -
Tpr5g1194 328 CDD SANT 100 123 IPR001005 -
Tpr5g1194 328 MobiDBLite consensus disorder prediction 221 244 - -
Tpr5g1194 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 74 IPR017930 -
Tpr5g1194 328 PANTHER MYB TRANSCRIPTION FACTOR 1 325 - -
Tpr5g1194 328 SMART sant 79 127 IPR001005 -
Tpr5g1194 328 SMART sant 26 76 IPR001005 -
Tpr5g1194 328 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 325 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr5g1194 328 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Tpr5g1194 328 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Tpr5g1194 328 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Tpr5g1194 328 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Tpr5g1194 328 CDD SANT 29 74 IPR001005 -
Tpr5g1194 328 Gene3D - 24 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1194 Tpr-Chr5 23571510 23573956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1194 6 323 MYB Transcription Factor Family AT5G49620 53.274 2.48e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g1194 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1194 K09422 - gmx:100805341 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1194 5 23571510 23573956 Tpr5g1194 5 23571510 23573956 ECH