LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g1168	ATGATGAAGGAATGTGATTTTCACTACGCTGCGACTGTAATGCATAAACCTAAGAAACGGTTAAGGGAATTCGGTGACGCCGCTGATTCTCACTGTTACTCACTCGCTGATCAATGTGGTTTGCGTCTTCGCCGTCGGATCAACGGTGACTGGGTCCCACCTCTCCTTCCACCACAGGAAAAACCACCTGAGATGAAGAAAAAGATTAAGCTCATAATCAAATTCACGGGGAAGTCAAAAAACGAGTCCAAATTTAAAAAGGGGGAAACAGTGGAAGTTAGCGACGGCAATGAAGGTTATAAAGGTGCTTGGTTTGTGGCTACTGTTATTGACACATTAGAAAAAGAAAGGTTTCTAGTTGAATACAAAGATTTGGTGACAAATGATGATGGTACTCGACCCCTGAAAGAAGAAATTGATGCTAAGTTTATTAGGCCTTCTCCTCCTTATGTTCCAAATTTTGGTTCTTTCAAAAAGTTACAAGAAGTGGATGCATGGTACAATGATGCTTGGTGGGAAGGTGTGGTTGTTGAATTAGTGAACACGACAGAGTGTTCTGTTCATTTTATGAACAATGAAGTGTTGAAAATTGAATGTTCGAAGCTAAGACCTCATCAAGATTGGATTAATGGAAAATGGATCATGTCTTCTAAGGAGCCGAGTGAGCTAGTGAAGAAGTTTGGAGATGTGATGCCAAAAGCCAACAATCTTGCCGGAACAAAGTTGATTTTGAAATATCCGATTCCTTGTGAGAATGCAAAGCAACCTACAGCTGTAATAACAAGGACACTATACACTGGAAGCAAATTTGATTTACATTTCTACAAAGGGGAAAAGGTAGAAATTCGAAGTGATGAAAAAGGCTATGAAGGTTCATGGTATACAGCAACTGTTGTCGATTTCTTCAATAATGGAAAGTACTTGGTGGAGTATTCGACACTGAAAACAGATGACTTAACAGAACCACTGAAAGAAGAAATAAATGTTTCAGATATTAGACCGTGTCCGCCTGAAGTTGATCGTTTTTGTCGATATGTGACATGCCAAAGGGTTGATGTTTGGTTTAATGATGGATGGTGGGAAGGTGTAGTATCTAATGTTGCTCATGGTTTCAATGGTTTCGAGTATAAGGTTTATTTTTGGACTTCGAATGAGGAGCTGGAATTTGAACACTGTTATCTTAGGCCTCATCAAGATTGGATTGATGGAAGATGGATGCTTGCTTCTTTTGTATGA	1236	0.3956	MMKECDFHYAATVMHKPKKRLREFGDAADSHCYSLADQCGLRLRRRINGDWVPPLLPPQEKPPEMKKKIKLIIKFTGKSKNESKFKKGETVEVSDGNEGYKGAWFVATVIDTLEKERFLVEYKDLVTNDDGTRPLKEEIDAKFIRPSPPYVPNFGSFKKLQEVDAWYNDAWWEGVVVELVNTTECSVHFMNNEVLKIECSKLRPHQDWINGKWIMSSKEPSELVKKFGDVMPKANNLAGTKLILKYPIPCENAKQPTAVITRTLYTGSKFDLHFYKGEKVEIRSDEKGYEGSWYTATVVDFFNNGKYLVEYSTLKTDDLTEPLKEEINVSDIRPCPPEVDRFCRYVTCQRVDVWFNDGWWEGVVSNVAHGFNGFEYKVYFWTSNEELEFEHCYLRPHQDWIDGRWMLASFV*	412

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g1168	411	Pfam	Agenet domain	88	149	IPR008395	-
	Tpr5g1168	411	Pfam	Agenet domain	277	337	IPR008395	-
	Tpr5g1168	411	PANTHER	AGENET DOMAIN-CONTAINING PROTEIN-RELATED	23	411	-	-
	Tpr5g1168	411	SMART	agenet_At_2	343	402	IPR014002	-
	Tpr5g1168	411	SMART	agenet_At_2	83	152	IPR014002	-
	Tpr5g1168	411	SMART	agenet_At_2	272	340	IPR014002	-
	Tpr5g1168	411	SMART	agenet_At_2	155	210	IPR014002	-
	Tpr5g1168	411	PANTHER	AGENET DOMAIN-CONTAINING PROTEIN	23	411	-	-
	Tpr5g1168	411	Gene3D	-	264	341	-	-
	Tpr5g1168	411	Gene3D	-	73	154	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g1168	Tpr-Chr5	23123058	23126126	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g1168	283	400	PHD Transcription Factor Family	AT5G58610	33.094	7.49e-12	65.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g1168	-		-	mtr:MTR_2g033390	533.102

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