Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1153 ACAATGAAAATTCTCTTTTTTATCTTATTTTTTTTACCATATTGTGCTCTTGCCTTTGATGTAAAAAATGTTATAGACTCTCCTATGTTAACAAAAAAGATAGGAACTAATCGCACTATTATAGTTGATATCAATGGAAAAGGTGAATTTAAATCAGTTCAAGCTGCAATTGATTCAATTCCTGAAGGAAATTCTCATTGGGTCATTGTTCATATTAGAAAAGGAGTATATAGAGAAAAAGTGCACATACCAAAGACTAAGCGTTACATATTCTTGAGAGGGAATGGAAGAGGAAGAACTGCCATTGTTTGGTCTGAAAGCTCATCTGACAACATAGCTTCTGCCACCTTCAAAGCTGAAGCCCCTGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGATGCACCTACAGGGGTTGCATATACTTCACAAAATCAATCAGTGGCAGCATTTGTGGCAGCAGATAAAATAGCATTTTACCATTGTGCATTTTATAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCATGTTACATTCAAGGCTCTATTGATTTCATATTTGGTCGTGCCAGATCACATTTCCATAGTTGTGAGATATTTGTGGTTGATGATAAAAGAATAACAATTCGTGGGTCAATTACAGCTGCAAGTAGAGAAAATGAACGTGAGATGTGTGGATATATATTTATTAAATGCAAAGTTTATGGTATTGGTGGTGTGTACTTAGGAAGGGCTAAAGGTCCTTATTCTAGGGTTATTTTTGCTAACTCATACCTCTCCAATTCCATTGTCCCAGAAGGTTGGACCAATTGGAGTTATGATGGTCCCACAGAACATCTTTATCATGCCGAGTATAAATGCCATGGACCTGGAGCTAGAACAGAAGGAAGAGCTCCTTGGGCAAGGCAGCTAAGTGATGAACAAGTTGCTCCATTTTTAGCTATTGATTACATTGATGGAAAGAATTGGTTACCAGCATATCTGTAA 1005 0.3652 TMKILFFILFFLPYCALAFDVKNVIDSPMLTKKIGTNRTIIVDINGKGEFKSVQAAIDSIPEGNSHWVIVHIRKGVYREKVHIPKTKRYIFLRGNGRGRTAIVWSESSSDNIASATFKAEAPDFIAFGISFKNDAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRARSHFHSCEIFVVDDKRITIRGSITAASRENEREMCGYIFIKCKVYGIGGVYLGRAKGPYSRVIFANSYLSNSIVPEGWTNWSYDGPTEHLYHAEYKCHGPGARTEGRAPWARQLSDEQVAPFLAIDYIDGKNWLPAYL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1153 334 Pfam Pectinesterase 40 326 IPR000070 GO:0030599|GO:0042545
Tpr5g1153 334 Gene3D - 34 333 IPR012334 -
Tpr5g1153 334 SUPERFAMILY Pectin lyase-like 36 332 IPR011050 -
Tpr5g1153 334 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Tpr5g1153 334 PANTHER PECTINESTERASE 67-RELATED 6 333 - -
Tpr5g1153 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1153 Tpr-Chr5 22898690 22900774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1153 26 330 Carbohydrate Esterase AT1G05310 38.535 6.03e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1153 - - mtr:MTR_2g033970 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1153 5 22898690 22900774 Tpr5g1153 5 22898690 22900774 ECH