Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1139 ATGAATCAAAGCACACGAGACACTGGAAAAACAGGTCCGACGGCAGCTGAATATCAAAGGCAGAGATCGGACGAGTCAACAAATATTATGAGTAATAATAATAGTGATGGAGGTGATAGAGGTGAGTATGAAGATGAGTATGGAGGTCAAAATGGGAATGGCGATGAGGATTGTAGCGGAGATGATAGCGTTGAGTATGAAGATGAACATGAACATGAAGGGAATGAAGATGATAGAGGTAAGTATGAAGATGAACATGAAGGCAATGGAGACGAGGATGGTAGTGGAGATGATAGTGGTGGTGAGTATGGAGATCTAAGTGGAGATGGAGACGGAGATGGTAGTGAGTATAGTAGTAGTGAAGAATCAGATGAAAATAACTCTACAGAAGATGAAATAACCATAGATGGTTTGACAGATATTTTGAAGATTGATATGAAAAATATTAGCATTGATGATGTTAGTAGGTACGATTTTTGTGATTTAGAAGTTGCTTATCAATTCAATTGTTGGTATTCTAGAATGAATGGTTTCTCTGTACGCAAAAGCAAGGTTGGTAGGAATAGCAAGGGTGAAAAGTTGCAACAAACATTTGTTTGTTCAAATGAAGGATACAGAGAAGATAAGGGTTTAAATACGAAAAGTCGAAAGCGTGAACCAAGGCGTGAAACTAAGTGTGGTTGTGAGGCTAAATTTCGTGTTCACATTAATACTCTATCAGGGAGATGTGCAGCTGATGATTCTCAAATTCAAAGTTTTAGAAAAGTTGGGATTAAGACTTGTCAAGTGTTTGGTTCGTTTGCAAACAACTCTGGAGGGTATCACAAGATAGGTTTTATAAAAAAGGACCTATATAATCAAGTTGGTAAACAAAAACGCCAACAATCATCTGATGCCTCTACCGCGTTAAAGTTTCTCAAAGATGTGGGATCTAAAGACCCGTTGATGTTTGTTAAGCACACAATTGACAATGAAGGGAGGTTGCAACATCTATTTTGGTGTGATGGGGAAAGTAGATTGAATTATAGAGTGTTTGGTGATGTCTTGGCTTTTGACGCCACATATCGGAAGATCAAGTATATGTGTCCTTTTGTCGTATTTTCTGGTGTTAATCACCATAATCAAATAGTTTTTGCAACTGCACTTGTGTCGAAGGAGAATGAAGAAACATATGTGTGGCTTTTGGAACAATTTATGGAGGCAATGGAAGGCAAGATGCCAATCTATGTTATAACTGATGGTGATTTAGCCATGAAGAATGCAATACGGAGAGTATTTCCTAGAGCCCACCACCGGTTATGTGCATGGCATTTGCTATGCAATACAATTAGCAATGTAGGTATTCCAGATGTCATGCCGTACCTAAAGAAGTGCATGTTAGGTGACATTGAAGTGAGTCGATTCGAAGAAACATGGGATGAAATGGTTAATAAGTTTGGATTGGAAGACAACACTTGGATAAGAGATTTGTATGAAAAAAGAAACATGTGTGCTACAGCTTTGATATGTGGAAATTTTTTTGCAGGGATAAGGACCACTTCATGGTGTGAAGCGTTGCACAGTCATATTGGAAAGTTTGTTCAGTCGAGATGTAATTTAACTGATTTTGTTGAACAATTCCATAGGTGCCTTACTTACTTTCGGTTTAGGGAAGTGGAATCTGATTTTGAATCGAATTATGGTCAGTTTGTGTTGCAAACAAGTTTGAGGTCCATTGAGAGGTTTGCATCAAGGCATTTCACAAATAAGATGTTTATTTTATTTCGACCCGTCTTATCTAAGGCATCCTTAATAAGGGTGTTGGAGTGCCATGAGATGGCAATGTACTCAATTTATTTGGTGACAAAGTGGAAGAGTTCTAGAATAGTGTGGAATGTTTCTTATTGCCCATCACCTGTAGATATTAGATGTTCTTGCCAAAGGATGGAGTCCATAGGTTTGCCTTGTGAGCACATTATAGTTGTGTTGGTGAACTTAGACTTTGATGAGTTGCCTGGATATTTGGTATTGAATAGATGGTCTAAGACTGCGAAGGAAAACATTAGCGGAAGTTGCACAAATGCCTCATTTTACTGGGATTCTCATTTGATTGCTAGACTTGCAAATTTACACTATTTATTTAAAGAATTAGCAGTGGTTGCACACCGCAATGATGAAGACTACAAACATATTGTTAATCTCATGACAGTTGAAATTAATAAGTTGAGAGAGAAGCATGGAAATGCAGGCAGTGCAGAAAATATCGAGACTGAAAACATTGACGAGACACTAAAGGATCCCGAAATTGTGAGATCGAAGGAATATGGCCAGAGCACTAAAGGATCCAGCTATAAGTGCGGCGCTTGTGGTATAGTTGGGCACAATATAAGATCTTGCCAAAACATTACTGCTAATACAACAATGAACGAACAGTCTGACAGTCAAATGCATCAGTTTGGAAGCTCCGCTGCTGAGTTTATGCTTTCAAGCAGTCATTCCTAG 2481 0.3845 MNQSTRDTGKTGPTAAEYQRQRSDESTNIMSNNNSDGGDRGEYEDEYGGQNGNGDEDCSGDDSVEYEDEHEHEGNEDDRGKYEDEHEGNGDEDGSGDDSGGEYGDLSGDGDGDGSEYSSSEESDENNSTEDEITIDGLTDILKIDMKNISIDDVSRYDFCDLEVAYQFNCWYSRMNGFSVRKSKVGRNSKGEKLQQTFVCSNEGYREDKGLNTKSRKREPRRETKCGCEAKFRVHINTLSGRCAADDSQIQSFRKVGIKTCQVFGSFANNSGGYHKIGFIKKDLYNQVGKQKRQQSSDASTALKFLKDVGSKDPLMFVKHTIDNEGRLQHLFWCDGESRLNYRVFGDVLAFDATYRKIKYMCPFVVFSGVNHHNQIVFATALVSKENEETYVWLLEQFMEAMEGKMPIYVITDGDLAMKNAIRRVFPRAHHRLCAWHLLCNTISNVGIPDVMPYLKKCMLGDIEVSRFEETWDEMVNKFGLEDNTWIRDLYEKRNMCATALICGNFFAGIRTTSWCEALHSHIGKFVQSRCNLTDFVEQFHRCLTYFRFREVESDFESNYGQFVLQTSLRSIERFASRHFTNKMFILFRPVLSKASLIRVLECHEMAMYSIYLVTKWKSSRIVWNVSYCPSPVDIRCSCQRMESIGLPCEHIIVVLVNLDFDELPGYLVLNRWSKTAKENISGSCTNASFYWDSHLIARLANLHYLFKELAVVAHRNDEDYKHIVNLMTVEINKLREKHGNAGSAENIETENIDETLKDPEIVRSKEYGQSTKGSSYKCGACGIVGHNIRSCQNITANTTMNEQSDSQMHQFGSSAAEFMLSSSHS* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1139 826 SMART 26again6 635 662 IPR006564 GO:0008270
Tpr5g1139 826 ProSiteProfiles Zinc finger SWIM-type profile. 609 660 IPR007527 GO:0008270
Tpr5g1139 826 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 250 744 IPR031052 GO:0006355
Tpr5g1139 826 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 162 243 IPR031052 GO:0006355
Tpr5g1139 826 MobiDBLite consensus disorder prediction 1 132 - -
Tpr5g1139 826 MobiDBLite consensus disorder prediction 1 37 - -
Tpr5g1139 826 Pfam FAR1 DNA-binding domain 168 240 IPR004330 -
Tpr5g1139 826 PANTHER OS02G0262500 PROTEIN 250 744 - -
Tpr5g1139 826 PANTHER OS02G0262500 PROTEIN 162 243 - -
Tpr5g1139 826 Pfam SWIM zinc finger 612 656 IPR007527 GO:0008270
Tpr5g1139 826 MobiDBLite consensus disorder prediction 73 88 - -
Tpr5g1139 826 MobiDBLite consensus disorder prediction 115 131 - -
Tpr5g1139 826 Pfam MULE transposase domain 348 439 IPR018289 -
Tpr5g1139 826 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1139 Tpr-Chr5 22691266 22694471 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g1139 MULE 1.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1139 - - gmx:102667255 619.002