Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1116 ATGTTTGTTTTTGCATCTTTCATTTGCAGTGATATTCCACAAACATTACAACTCTCAAAACCCACAAAGATGAAATCTTTCTCTTCAATTCAACCACCCCACTGTTTCCATTTCGCACCATTTTTCTCTTCCACTTCCATAAGATTTTGCATCAGGACTCCAATTCCTTTCTCTGCAAGGGTCTTCTTTTGTCAGGCAAAATCTGGCACGAATGAGTCATTCAACATAAAAGTGTTGCCTCCAACCCTATTAGCAGACCCTCATATTGTTTATCTTATGGAACATGGAATGAATAGTGATCAAATTAGGACTCTTATGCGACGATCCCCGGCTTTTGCCCGCTATAGTTTGGAGGATAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCCTCACTAAAAGGCCTCAATTATGTGCACTCAGTCTATCTAAAAATATTAAGCCCACCGTGAAATTCCTCGAATCTTTGGGGGCCGACAAGAAACAATGGGTGAAAGCTATCTACCGTTTCCCGACCTTGCTAACTTATAGCAAGCAGAAAATTAATGAAAAGGTAGATTTTCTCCTTGAATTAGGCATCTCAGACGAGAGCATAGGTAGGATTTTAACTCGTTTCCCTAATATCGTTGGTTGCAGTGTAGAGGACAATCTCCGACCAACAGCAACGTACTTCCGTTCATTAGGGGTTGATGTTGGCGCTCTTCTGTTGAGGTGTCCGCAAATGATTGGTCTTAGCATTGAGGCGAATATAAAGCCTGTAACAGAATTTTTCTTGGAAAGGGGATATACCTTGGAAGAAATTGGGACTATGATTTCGAGATGTGCAATGTTGTACACTTACAGCTTGACTGAGACTATGGTCCCAAAATTGGATTTTTTTATGACTACGGATTACCCGAAATCAGAGCTGGTTAACTTCCCTCAATATTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCATGAAAGCTTCTGGAGTAAGAGTAGTGTTGAATCAGCTTCTTTCAGTGACAAGCAGCGACTTTGAAGAGATCTTATTAAAAAAATTAAAGAAATTGCAAGTTGATTAG 1113 0.3944 MFVFASFICSDIPQTLQLSKPTKMKSFSSIQPPHCFHFAPFFSSTSIRFCIRTPIPFSARVFFCQAKSGTNESFNIKVLPPTLLADPHIVYLMEHGMNSDQIRTLMRRSPAFARYSLEDKIKPLVEFFLELGVPKEQIPIILTKRPQLCALSLSKNIKPTVKFLESLGADKKQWVKAIYRFPTLLTYSKQKINEKVDFLLELGISDESIGRILTRFPNIVGCSVEDNLRPTATYFRSLGVDVGALLLRCPQMIGLSIEANIKPVTEFFLERGYTLEEIGTMISRCAMLYTYSLTETMVPKLDFFMTTDYPKSELVNFPQYFGYSLEQRIKPRYARMKASGVRVVLNQLLSVTSSDFEEILLKKLKKLQVD* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1116 370 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 87 369 - -
Tpr5g1116 370 SMART mt_12 210 241 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 SMART mt_12 175 205 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 SMART mt_12 279 310 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 Pfam mTERF 91 270 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 Pfam mTERF 244 357 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 PANTHER CGI-12 PROTEIN-RELATED 87 369 IPR003690 GO:0003690|GO:0006355
Tpr5g1116 370 Gene3D Transcription termination factor 3, mitochondrial 141 366 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1116 Tpr-Chr5 22357191 22366693 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1116 mTERF 8.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1116 K15032 - gmx:100781900 413.305