Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1115 ATGCGACGATTCCCGGCTTTCTTCCGCTATAGTTTGGAGGGTAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAATTTGGAGTGCCGAAAGAACAAATTCTTATTATCCTCGCTAAAAGACCTCGATTATGTGCACTCAGTCTATCTAAAAATATTAAGCCCACCGTGAAATTCCTCGAATCTTTGGGCGTCGACAAAAAACAATGGGCGAAGGCGATATACCGCTTCCCTGCCTTGCTAACTTATAGCAGGCAGAAAATTAATGAAAGTGTAGATTTTCTCCATGAATTAGGCATCTCAGACGAGAGCATAGGTAGGATTTTAACTCGTTTCCCTAATATCGTTGGTTGCAGTGTAGAGGACAATCTCCGACCAACAGCAACGTACTTCCGTTCATTAGGGGTTGATGTTGGCGCTCTTCTGTTGAGGTGTCCGCAAATTATTGGCCTTAGCATTGAGGCGAATATAAAGCCTGTAACCGAATTTTTCTTGGAAAAGGGATATACCTTGGAAGAAATTGGGACTATGATTTCGAGATGTGCAATGTTGTACGCTTACAGCTTGACTGAGACTATGGTCCCAAAATGGGATTATTTTATGACTATGGATTACCCGAAATCCGAGCTGGTTAAATTCCCTTATTATTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCATGAAAAGTTCTGGGAGGAGATTAGCGTTGAATCGGCTTCTTTCACCGTCAAGCAGCAACTTTGAAAAGGTCTTAAAAATGAAAAATAAAGGAATTGCAGGTTGA 795 0.4075 MRRFPAFFRYSLEGKIKPLVEFFLEFGVPKEQILIILAKRPRLCALSLSKNIKPTVKFLESLGVDKKQWAKAIYRFPALLTYSRQKINESVDFLHELGISDESIGRILTRFPNIVGCSVEDNLRPTATYFRSLGVDVGALLLRCPQIIGLSIEANIKPVTEFFLEKGYTLEEIGTMISRCAMLYAYSLTETMVPKWDYFMTMDYPKSELVKFPYYFGYSLEQRIKPRYARMKSSGRRLALNRLLSPSSSNFEKVLKMKNKGIAG* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1115 264 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 1 260 - -
Tpr5g1115 264 Gene3D Transcription termination factor 3, mitochondrial 46 259 IPR038538 -
Tpr5g1115 264 Gene3D Transcription termination factor 3, mitochondrial 1 45 IPR038538 -
Tpr5g1115 264 SMART mt_12 34 65 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 SMART mt_12 174 205 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 SMART mt_12 1 29 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 SMART mt_12 70 100 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 Pfam mTERF 139 252 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 Pfam mTERF 1 166 IPR003690 GO:0003690|GO:0006355
Tpr5g1115 264 PANTHER CGI-12 PROTEIN-RELATED 1 260 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1115 Tpr-Chr5 22351219 22352533 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1115 mTERF 3.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1115 K15032 K12177 gmx:100781900 385.185