Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1114 ATGTTTGTTTTTGCATCTTCCATTTGCAGTGAAATTCCACAAACACTACAATTCTCAAAACCCACAAATATCAAAACTTTCTCTTCAATTCAACCACCCCACTATTTCTCTTCCACTTCCATAAGATTTTGCATCAGGACTCAAGTTCCTTTCTCTACAAAGGTCTTCTTTTGTCAGGCAAAATCTGGCACAAATGAGTCATTAAACATAAAAGTGTTGCCTCCAACCCTATTAGCGGCCGAAAAAGAAGAAGCCAAGGCTGTATTAACCTTGTTTTTGAGGAAACAAGGTTTGAGCAATGCAAATGCAGCAAGAACCATCAATAAATCAGATCCTTTTATCGACCACCTTCTCTCAAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGTAGAGAGCTTACAACTCTTGAGATTAGGGATGCTCTTATCTCTTATCTTGAATCGCTTTTCCAGGAGCATGGAGACGTTCTAATCGATGTAGTGGAAAACTATCCAAACCCACCAGTTAAGGATAAAACAGCCGTGCCGATTACCCCTTCTAATCCTAGTCCAGTTGTAGACACTAAGAAGCTTAAAACAGTGAGTGGTACAGATCCTGCAGCGGGCAACCTTCGCCCTCATATTGTTTATCTTATGGAATTTGGAATGGATAGCGATCAGATTAGGCTTATTATGCGACGATTCCCGGCTTTTGCCTACTATAGTTTAGAGGGTAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCCTCACTAAAAGACCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAGCCTACCATGAAATTCTTCGAATCTTTGGGCGTCGACAAAAAACAATGGGCAAAGGTGATTTACCGCTTCCCTGCCTTGCTAACTTATAGCAGGCAGAAGATTAATGAAAGTGTAGATTTTCTCCGTGAATTAGGCATCTCAGACGAGAGCATAGGTAAGATTTTAACTCGTTGCCCTAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCAACAGCAACATACTTCCGTTCTTTAGGGGTTGATGTTGGCGCCCTTTTATTCAGGTGTCCGCAAAATTTTGGTCTTAGCATTGAGGCGAATATAAAGCCTGTAACAAGATTTTTCTTGGAAAGGGGATATACTTTGAAAGAAATTGGGACTATGATTACGAGATATGGAATGTTGTATACTTTTAGCTTAACTGAGAATATGATGCCAAAATGGGATTACTTTATGACTATGGATTACCCGAAATCCGAGCTAGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCGTCAAAAAAGCCGGGGTGAGATTACTGTTGAATCAGGTTCTTTCACTGTCAAACAGCAACTTTGAAGAGGTCTTAAAAAGGAAAATAAAGAAATTGCAAAATGATTAG 1476 0.3896 MFVFASSICSEIPQTLQFSKPTNIKTFSSIQPPHYFSSTSIRFCIRTQVPFSTKVFFCQAKSGTNESLNIKVLPPTLLAAEKEEAKAVLTLFLRKQGLSNANAARTINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLFQEHGDVLIDVVENYPNPPVKDKTAVPITPSNPSPVVDTKKLKTVSGTDPAAGNLRPHIVYLMEFGMDSDQIRLIMRRFPAFAYYSLEGKIKPLVEFFLELGVPKEQIPIILTKRPQLCGISLSENLKPTMKFFESLGVDKKQWAKVIYRFPALLTYSRQKINESVDFLRELGISDESIGKILTRCPNIVSYSVEDNLRPTATYFRSLGVDVGALLFRCPQNFGLSIEANIKPVTRFFLERGYTLKEIGTMITRYGMLYTFSLTENMMPKWDYFMTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKKAGVRLLLNQVLSLSNSNFEEVLKRKIKKLQND* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1114 491 SMART mt_12 400 431 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 SMART mt_12 364 395 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 SMART mt_12 432 463 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 Pfam mTERF 74 320 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 Pfam mTERF 309 478 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 43 489 - -
Tpr5g1114 491 Coils Coil 474 491 - -
Tpr5g1114 491 PANTHER CGI-12 PROTEIN-RELATED 43 489 IPR003690 GO:0003690|GO:0006355
Tpr5g1114 491 Gene3D Transcription termination factor 3, mitochondrial 265 487 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1114 Tpr-Chr5 22343438 22354060 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1114 mTERF 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1114 K15032 K12177 gmx:100781900 716.457