Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1109 ATGATGGCACAAAACTTAATGGGACAACTTGTTGGTTCTGAGATACATGGGTTTCATACTTTGAGAGACTTGGATGTTGGCGAAACCTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAACGAGATTCAAGCCATACTCAGCAATCACAAATATTTTACTATCCATGTCAAGCCATTGCATTTGCCGAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGCCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAAGCTTTGTTCGAAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCTCAAGGTTCTCCTGTTACACCGGTGAATTCAAATTCGAGTTCTACTTCTGATCCAACTACACCGTGGATTCTATCAGAAGACTTAGATTCTGGAACCAACAGTGCTTATACTAATGGGCTCAATGGGAATTCAACCGTCGAAAGTCATGAACAGAAGCTTCACGAGCTTAATACACTTGATTGGGATGATTTGGTGGCTTCTAATGCTAACACTCCCACTATACATAATGGAGGCAATGAACCGGCTTTCTATCAACTAAATCAAAGCTTACTAAATGGAAGCTTTGGCAATGTTCCTTCGTTTAGCAATCCAACTCCGCCTGAGTCTGGGATTAGTCATGTTTCTTACAGTTTTCCAGAAAGTGTTAACCTTCAGAATAATCATCCTCTGACTTTTGGCGGTGTTGATTCCATGGAGGACACTTTAGTCAATGAAGGTTTGCAAAATCAGAACAGCTTTGGAACGTGGATGAACAATGCCATAACTGATACAACATGTTCCGTAGAGGCGTCGCCTCTTGAATCATCAATTCCTTCATCTGTTCCTGATCCATTTTCATCCCTGCTGATGGATAATAATCAGCAATCTTCTCTACCAGATCAAGTATTTCATCTTACTGAGGTGGCTCCTGCATGGGCTTCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCGACATCTTGCAAAGGCCAATCTAGTGTGCATCTGCGGCGAAACAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATCACCGCAATCTCCTGGATTTGTAAATCTTTTTTTGAGCTTTGATGGTCATAAACCTATCAGTCAAGTTGTTAATTTTGAGTATCGAACTCCTATTTTGCACGATCCTGCTGCTTCAATGGAAGAGACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTAATTTGCTTTTTACAACACCAAAGACCATTGATGTTTTCTCTAGTAAAGTATCACCTACTGCACTGAAAGAGACTAAAAAGTTTGCCTCCAAAACATTATTTATTCCCAAAAGTTTGAAACACTTTATGAAGTCGTCTGACGCAAATGCAATTCCATATCCACATGCAAAAAATACCTTGTTTGAAATTGCGTTGAAAAACAAACTAAGAGAATGGCTTTTGGAACGAATTGTCTTAGGATCCAAGGTTACTGAGTATGATGCACAAGGCCAAGGTGTACTTCATTTGTGTACACTTTTGGGATATACTTGGGCTATTGCTTTGTTTTCATGGGCAGGCCTGTCGCTTGATTTCCGTGACAAATTTGGATGGACGGCTCTTCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTAGTGGGGCAAAGCCCAATTTGGTCACAGATCCAACTCCACAAAATCCTGGTGGCTGTACTGCTGCTGATCTTGCTTATATGAGGGGCTATGATGGTTTAGCGGCTTATCTTTCTGAAAAGGGTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGATACCTCGACAAATGATCCAGTAAATCCTGAGAACCTTACCGAGGACCAGATGCACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGAGAGCACTCGCTGAAATTGCGATATCAGTCGGTTCAATTTCTTAGCCCAGAGGAGGAAGCGCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCGATGGCAGCCGCTGCTCGGATCCAGTATAAATTCCGTTCATGGAAGCTGCGTAGAGAGTTTCTCAACATGCGACGTCAGGCTATTAAAATTCAAGCTGCATTTAGGGGATTTCAAATGCGTAGGGATTACCGTAAGATTCTATGGTCGGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTTGAGGTGAATCCCGACGAAGACATGAAAGATGAGAAGCAGGAAAGCGATGTAGAGGAGGACTTCTTTAAGACCGGTAGGAAACAAGCAGAGGAACGTGTTGAGAGATCAGTGGTACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAGTTGGAACTTGAATTAGAAGAACTCATCAATTCTGATGTGGACATGTCAACACCAAAGACATCATAG 2727 0.4206 MMAQNLMGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIQAILSNHKYFTIHVKPLHLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPVTPVNSNSSSTSDPTTPWILSEDLDSGTNSAYTNGLNGNSTVESHEQKLHELNTLDWDDLVASNANTPTIHNGGNEPAFYQLNQSLLNGSFGNVPSFSNPTPPESGISHVSYSFPESVNLQNNHPLTFGGVDSMEDTLVNEGLQNQNSFGTWMNNAITDTTCSVEASPLESSIPSSVPDPFSSLLMDNNQQSSLPDQVFHLTEVAPAWASSTEKTKVLVTGYFHNDYRHLAKANLVCICGETSVPVEIVQVGVYRCWVSPQSPGFVNLFLSFDGHKPISQVVNFEYRTPILHDPAASMEETYNWIEFRLQMRLSNLLFTTPKTIDVFSSKVSPTALKETKKFASKTLFIPKSLKHFMKSSDANAIPYPHAKNTLFEIALKNKLREWLLERIVLGSKVTEYDAQGQGVLHLCTLLGYTWAIALFSWAGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSSGAKPNLVTDPTPQNPGGCTAADLAYMRGYDGLAAYLSEKGLVEQFNDMSLAGNISGSLDTSTNDPVNPENLTEDQMHLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFLSPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYKFRSWKLRREFLNMRRQAIKIQAAFRGFQMRRDYRKILWSVGILEKVILRWRLKRKGFRGLEVNPDEDMKDEKQESDVEEDFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEELINSDVDMSTPKTS* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1109 908 SMART CG_1_2 29 147 IPR005559 GO:0003677
Tpr5g1109 908 SMART ANK_2a 589 618 IPR002110 GO:0005515
Tpr5g1109 908 SMART ANK_2a 628 659 IPR002110 GO:0005515
Tpr5g1109 908 ProSiteProfiles IQ motif profile. 776 800 IPR000048 GO:0005515
Tpr5g1109 908 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 903 - -
Tpr5g1109 908 Gene3D - 521 660 IPR036770 -
Tpr5g1109 908 Pfam IQ calmodulin-binding motif 778 797 IPR000048 GO:0005515
Tpr5g1109 908 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Tpr5g1109 908 MobiDBLite consensus disorder prediction 146 169 - -
Tpr5g1109 908 ProSiteProfiles IQ motif profile. 700 729 IPR000048 GO:0005515
Tpr5g1109 908 ProSiteProfiles IQ motif profile. 857 885 IPR000048 GO:0005515
Tpr5g1109 908 SUPERFAMILY Ankyrin repeat 524 654 IPR036770 -
Tpr5g1109 908 SMART iq_5 855 877 IPR000048 GO:0005515
Tpr5g1109 908 SMART iq_5 775 797 IPR000048 GO:0005515
Tpr5g1109 908 SMART iq_5 699 721 IPR000048 GO:0005515
Tpr5g1109 908 SMART iq_5 733 755 IPR000048 GO:0005515
Tpr5g1109 908 Gene3D - 753 800 - -
Tpr5g1109 908 ProSiteProfiles Ankyrin repeat profile. 589 621 IPR002110 GO:0005515
Tpr5g1109 908 SUPERFAMILY E set domains 354 440 IPR014756 -
Tpr5g1109 908 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Tpr5g1109 908 ProSiteProfiles IQ motif profile. 753 782 IPR000048 GO:0005515
Tpr5g1109 908 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 903 - -
Tpr5g1109 908 Gene3D Immunoglobulins 347 443 IPR013783 -
Tpr5g1109 908 ProSiteProfiles Ankyrin repeat region circular profile. 589 617 - -
Tpr5g1109 908 Pfam Ankyrin repeats (3 copies) 531 618 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1109 Tpr-Chr5 22249408 22257220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1109 30 889 CAMTA Transcription Factor Family AT3G16940 54.545 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tpr5g1109 Ank_2 4.9e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1109 K21596 - gmx:100819198 1342.02