Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1086 ATGTCAGAAGGAGCCAGTCTTGTGCTAGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCAGAGGAAACAATCTTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAGAGATTTGTCTCTCAAGAAGCTGCTTATGAGTTTTATTGCAGTTTTGCTAAACAATTTGGCTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTTACAAGGAGGGATTTTACTTGCCATCGCGGCGGATTTCCCCAGAATAAACCTTCTGAAGATGGGGGAGGGGGGAAGGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGGATAGTGAAAAGGGTAGATTTTGATGTTCCTGAATGGCGTGTTACTGGTTTTAGAAATATCCACAATCACGAGTTGTTAAAATCCAATGAGGTGCATCTTCTTCCATCACACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCATATTTGCTAAAGCTGGAATGTCAGTCAGGCAAATGCTAAGATTAATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAATCTTTCAGAAATGTGGATAAAGATAATGATGCTATTGATCTGATTGCTATGTGTAAGAGATTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGTACATCGCATGGTCCTACGGCTCATCAATTCAATCATACGAGGTATTTGGTGATGCTGTGGTTTTTGATACAACGTACCGAGTAGAAGCTTATGATATGCTGTTGGGAATTTGGCTTGGAGTGGACAATAATGGAATGTTATGTTGCTTTAGTTGTGCACTTCTACGTGATGAAAATATGCTGTCTTTTTCATGGGCCTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATACTGACGGATCACAACACGTGGCTGAAAGACGCTATTGCTGTTGAAATGCCTGAAAGTAAACACGCGTTTTGTATATGGCATATTCTTTCCAAGTTCTCTGACTGGTTTTCTATACTTCTTGGATCACAATATGACTTGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGATGATTTCGAAGAAGGCTGGAGGCTAATGGTCAATAAATATGGACTCCATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGACGATACTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAATGTTTTCATTCAACGGTTCTTGAGTGCACAATCTCAACCAGAACGCTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGACCAAAGCAAAAGATGCAAAGGAAAATGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATAGAATCCCATGCTGCCACTATACTTACTCCTTATGCCTTGAGCAAACTTCAAGAAGAGCTAGTTTCGGCACCACAATATGCATCATTTCTGGTTGATGAAGGTGTTTTCCAGGTCAGACACCACTCTCAGACTGATGGAGGTTGCAAAGTGCTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCACCTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAAACATGTTCTACGAGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCAGTCCGTTGGCGAAGCATTGGTTCGTCTTCTCTTAACCATTTTCAGGGTACAACTAGCAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCATTGGTTTCAACACTTCTAATGGAATCCGTTGAAACTGATGAACGCCTTGATGTTGCTTGTGACCAAGTTTCCATGGTGCTATCACGTATCAAAACTCTTCCCCGATCATCACACGGGGTAAATGACATTACATTTAATTATGCATCAGATTCATTGATACCGCCAGAGGTAGAAGATACTGACGAAATTATTCATGGTTTTACAATTGCAAATACTCATGATTCTATGGCTTTAGGCAAGTTAAAGGATAGAAGGGCAAGAGACGGAGTTGATCTCAGTAGAAAATGTAGGCAGTTCTCAGCACCATTATGTGGACAATATGGACATGATGAATCTGATTGCTCAATAATGGCAGATGATAATATAAATGAAGATGCATTAGGGTATATGCAGTAA 2289 0.4076 MSEGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPSEDGGGGKAQRNRKSSRCGCQAYMRIVKRVDFDVPEWRVTGFRNIHNHELLKSNEVHLLPSHCPISPDDKSRICIFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMLCCFSCALLRDENMLSFSWALKAFLGFMKGKAPQTILTDHNTWLKDAIAVEMPESKHAFCIWHILSKFSDWFSILLGSQYDLWKAEFHRLYNLEMVDDFEEGWRLMVNKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQTESINVFIQRFLSAQSQPERFLEQVADIVDFNDRAGPKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASFLVDEGVFQVRHHSQTDGGCKVLWLPCQEHISCTCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPVRWRSIGSSSLNHFQGTTSRDQPERIQFLESLVSTLLMESVETDERLDVACDQVSMVLSRIKTLPRSSHGVNDITFNYASDSLIPPEVEDTDEIIHGFTIANTHDSMALGKLKDRRARDGVDLSRKCRQFSAPLCGQYGHDESDCSIMADDNINEDALGYMQ* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1086 762 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 742 - -
Tpr5g1086 762 MobiDBLite consensus disorder prediction 93 117 - -
Tpr5g1086 762 Pfam SWIM zinc finger 564 587 IPR007527 GO:0008270
Tpr5g1086 762 MobiDBLite consensus disorder prediction 1 22 - -
Tpr5g1086 762 Pfam MULE transposase domain 278 370 IPR018289 -
Tpr5g1086 762 SMART 26again6 565 592 IPR006564 GO:0008270
Tpr5g1086 762 ProSiteProfiles Zinc finger SWIM-type profile. 542 590 IPR007527 GO:0008270
Tpr5g1086 762 Pfam FAR1 DNA-binding domain 59 155 IPR004330 -
Tpr5g1086 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 742 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1086 Tpr-Chr5 21647152 21653083 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g1086 FAR1 1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1086 - - gmx:100778434 1382.47