Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1075 ATGAAACTCAGCAACAACAACAAAGTTTCCATGCCAACTTCAACTTCACCATTAAACTCCGGCGACAACTTCATCTCCGACCAGTTTCCGGCGGGTCTCCGTGTACTTGTTGTCGATGATGACCCAACCTGTCTCATGATCCTTGAAAGGATGCTTCGTTTTTGCCTCTACGAAGTTACCAAATGCAAGAGAGCCGAGGTTGCATTATCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTTTAAGTGATGTGCATATGCCTGATATGGATGGATTCAAACTTTTAGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAATGTGGTAATGAAAGGTGTGACACATGGTGCTTGTGATTATCTAATCAAACCGGTGAGAATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAACGAATAAGTGGAAGGATGTGAAGCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAAAGGTGTCCAGTGATGCTGATTACTCATCTTCAGCTAATGAAGGCAAGAGCTCGTCAAAGAAGAGGAGGGATGAGGAAGATGAAACAGATGAGAGGGATGATTCTTCCACGTCAAAGAAGCCACGAGTTGTTTGGTCTATTGAGCTCCACCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGTCATCTTCAGAAATACCGTTTGTATCTTCGACGGTTGAGCGGAGTTTCCCAGCAGCAGAGTAACTTGAACAACCCCTTCATGAATCCACAAGAGTCAATATTTGGGGCAACGCCAATAAATGGAATTGATCTTCAAACTCTTTCAACTTCTGGCCACCTCTCGCCTCAAAATCTAGCCAAGCTTCAAGCGGCAGGACTTTTCAGTTCTGAGAACTCAAAACTAAGATTTGGAGAAGGACAACTGCAACATATGAGCAGCATTAAACCGACGAACTTTCTTCACGGGATCCCTATCAACATGGAGCCAAAACAGTTTGCCAATTTCCATCAATCTGCTCAATCATTTAGCAGCACGAACACGCGAGTCAATGCTTCTTCTCCAAAGAGAAGCCCCTGGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCATATGCTAAATGAGAATATCAATTCTCATACTACAAGGTTTCCATCATCTTCGATGCAACCTACAGGACCAAATGGAATATCAGTCAATAGTTTCCCTCTTAGATGCACTCCGGGTTCATCCAGTAGCAGTTCAAAAGGTGCATTTCATGCGGAAGCTACTTCGGGAATTAAAGAATCAGGTGGATTTAGTTATGATATTTTTAATGAACTTCATCAGAAGTCCAACAATTGGTGCTTAGCAAATACAGGCCTGTCATATGATGCTTCTCAACATGCAAATCCTTTACAAGGCAGCATTGATGTCTCGCCGCCGATTTTAGGCAATGGTGGTTTTCACTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAGGTAGTCTTCAAAATGTTGGTCAACACCTCAATACACCTTTTTTTGACAATTCATTAAGGGTTAAGAGCGAAAGAATTCTGGATACAAACTCCGAGATTAACCCTTTCTCTGATCAATTCAGTCAAGAGGATCTCATGAGTGCATTTCTGAATCAGCACGAAGGCATTGGTCCACTTGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCCGGTTTATAATAGATCATGTTAG 1827 0.4154 MKLSNNNKVSMPTSTSPLNSGDNFISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRTNKWKDVKQSGGLDERDREKKVSSDADYSSSANEGKSSSKKRRDEEDETDERDDSSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNPFMNPQESIFGATPINGIDLQTLSTSGHLSPQNLAKLQAAGLFSSENSKLRFGEGQLQHMSSIKPTNFLHGIPINMEPKQFANFHQSAQSFSSTNTRVNASSPKRSPWLMQMAQSQPRGHMLNENINSHTTRFPSSSMQPTGPNGISVNSFPLRCTPGSSSSSSKGAFHAEATSGIKESGGFSYDIFNELHQKSNNWCLANTGLSYDASQHANPLQGSIDVSPPILGNGGFHSIQQTRQNRDGMSQGSLQNVGQHLNTPFFDNSLRVKSERILDTNSEINPFSDQFSQEDLMSAFLNQHEGIGPLENEFDFDGYSLDNIPVYNRSC* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1075 608 MobiDBLite consensus disorder prediction 188 211 - -
Tpr5g1075 608 CDD REC_typeB_ARR-like 35 149 - -
Tpr5g1075 608 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Tpr5g1075 608 Gene3D - 208 271 - -
Tpr5g1075 608 MobiDBLite consensus disorder prediction 156 177 - -
Tpr5g1075 608 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Tpr5g1075 608 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Tpr5g1075 608 MobiDBLite consensus disorder prediction 156 212 - -
Tpr5g1075 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 429 - -
Tpr5g1075 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 430 569 - -
Tpr5g1075 608 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Tpr5g1075 608 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Tpr5g1075 608 SMART REC_2 33 145 IPR001789 GO:0000160
Tpr5g1075 608 PIRSF RR_ARR_type-B 13 595 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tpr5g1075 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 430 569 IPR045279 GO:0009736
Tpr5g1075 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 429 IPR045279 GO:0009736
Tpr5g1075 608 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Tpr5g1075 608 SUPERFAMILY CheY-like 32 156 IPR011006 -
Tpr5g1075 608 Gene3D - 33 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1075 Tpr-Chr5 21497595 21500990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1075 67 603 Response Regulator Gene Family AT3G16857 45.340 6.21e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr5g1075 Response_reg 4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1075 - K14491 mtr:MTR_2g034960 1018.84