Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1074 ATGGATTCGTCGAAGGCTACCAAAGGTCCTCCAATATATGGCGTCTTGCATTTGATGATGCTTGATGACTCTTCGCGTGGAATGATTCCACCTGAGATGGTGGATACAATATGGTGTTGTTCAGAGTTTTCAGATCTTGCCATTGGAATTTGTTGCATCGAGATGAAATGGGTAGAGATGGCCATAACTGGCATTGACCTAAATTGGTATGATGCTCATGCAACCTTCTACGGTGATCCTTCTGGAGCTGGAACCATGCAGGGGGCTTGTGGTTATGGTGATCTGTACAAACAAGGATATGGACTTGCAAACACAGCACTAAGCACAGCTCTATTCAATAATGGAGCTACTTGTGGTGCTTGTTTTCAGTTATTTTGTGTCAACGATCCCCAATGGTGCATAAAGGGCGCAAAGCCAATCACAGTAACCGCAACAAATTTTTGTCCTCCAAATTCCGCCCAGCCCGGTGCTTGTAACCCACCACTAAAACACTTTGACTTAAGTTATAAAATGTTCACTTCTATTGCCTACAAAAAAGGCGGTATCATACCCGTTAAATATCGACGTGTTTCATGTGTGAAACAAGGGGGTGTTAGGTTTGAGATCAACGGAAACCCTAATTTCTTGTTTGTTTTGGTGTTCAATGTTGCCAATGCTGGTGATGTTTCTCGTGTTAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAGCGCAATTTTGGACAAAAGTGGAATACTGGAGTGAATTTGGTAGGACAAGCTTTGTCATTTCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTTTTATTCAGTTTCTCCTTACAACTGGCAATTTGGACAGACTTATCAGAGCCAGGGTAATTTTTAG 873 0.4215 MDSSKATKGPPIYGVLHLMMLDDSSRGMIPPEMVDTIWCCSEFSDLAIGICCIEMKWVEMAITGIDLNWYDAHATFYGDPSGAGTMQGACGYGDLYKQGYGLANTALSTALFNNGATCGACFQLFCVNDPQWCIKGAKPITVTATNFCPPNSAQPGACNPPLKHFDLSYKMFTSIAYKKGGIIPVKYRRVSCVKQGGVRFEINGNPNFLFVLVFNVANAGDVSRVSVKGSKTGWIPMKRNFGQKWNTGVNLVGQALSFQVTTSDGKTLEFYSVSPYNWQFGQTYQSQGNF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1074 290 SUPERFAMILY Barwin-like endoglucanases 62 215 IPR036908 -
Tpr5g1074 290 Pfam Expansin C-terminal domain 198 275 IPR007117 -
Tpr5g1074 290 PRINTS Expansin signature 99 113 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 126 137 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 140 150 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 155 172 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 172 185 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 196 208 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 243 264 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin signature 272 288 IPR002963 GO:0009664
Tpr5g1074 290 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
Tpr5g1074 290 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Tpr5g1074 290 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Tpr5g1074 290 PRINTS Expansin/Lol pI family signature 180 196 IPR007118 GO:0005576
Tpr5g1074 290 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Tpr5g1074 290 PRINTS Expansin/Lol pI family signature 272 286 IPR007118 GO:0005576
Tpr5g1074 290 Gene3D - 196 290 IPR036749 -
Tpr5g1074 290 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 207 286 IPR007117 -
Tpr5g1074 290 Pfam Lytic transglycolase 105 187 IPR009009 -
Tpr5g1074 290 PANTHER EXPANSIN-A15 54 290 IPR002963 GO:0009664
Tpr5g1074 290 SUPERFAMILY PHL pollen allergen 194 286 IPR036749 -
Tpr5g1074 290 SMART dpbb_1 104 187 IPR007112 -
Tpr5g1074 290 Gene3D - 59 192 IPR036908 -
Tpr5g1074 290 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 87 197 IPR007112 -
Tpr5g1074 290 PANTHER EXPANSIN-A21-RELATED 54 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1074 Tpr-Chr5 21491748 21494183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1074 64 290 Expansin Gene Family AT5G39280 61.572 5.67e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1074 - - zju:107415875 349.747