Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1064 ATGGCTATGTCTCACTCTTTCATTCCTCTGGGGGCTTGTAGTTATGGTGATCTGTACAAACAAGGATATGGACTTGCAAACACAGCACTAAGCACAGCTCTATTCAATAATGGAGCTACTTGTGGTGCTTGTTTTCAGTTATTTTGTGTCAACGATCCACAATGGTGGATAAAGGGCGCAAAGCCAATCACAGTAACCACAACAAATTTTTGTCCTCCAAATTCCGCCCAGCCCGGTGCTTGTAACCCACCGCTAAAACACTTTGACTTAAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGTATCATACCCGTTAAATATCGACGTGTTTCATGTGTGAAACAAGGGGGTGTTAGGTTTGAGATTAACGGAAACCCTAATTTCTTGTTTGTTCTGGTGTTCAATGTTGCCAATGCTGGTGATGTTTCTTGTGTTAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAGCGCAATTTTGGACAAAAGTGGAATATTGGAGTGAATTTGGTAGGAAAAGCTTTGTCATTTCAAGTTAATACAAGTGATGAAAAAACTTTGGAGTTTTATTCAGTTTCTCCTTACAACTGGCAATTTGGACAGACTTATCAGAGCCAGGGTAATTTTTAG 642 0.4019 MAMSHSFIPLGACSYGDLYKQGYGLANTALSTALFNNGATCGACFQLFCVNDPQWWIKGAKPITVTTTNFCPPNSAQPGACNPPLKHFDLSYKMFTSIAYEKGGIIPVKYRRVSCVKQGGVRFEINGNPNFLFVLVFNVANAGDVSCVSVKGSKTGWIPMKRNFGQKWNIGVNLVGKALSFQVNTSDEKTLEFYSVSPYNWQFGQTYQSQGNF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1064 213 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 10 120 IPR007112 -
Tpr5g1064 213 Gene3D - 119 213 IPR036749 -
Tpr5g1064 213 SMART dpbb_1 27 110 IPR007112 -
Tpr5g1064 213 SUPERFAMILY Barwin-like endoglucanases 11 138 IPR036908 -
Tpr5g1064 213 Pfam Lytic transglycolase 28 110 IPR009009 -
Tpr5g1064 213 PANTHER EXPANSIN-A15 11 213 IPR002963 GO:0009664
Tpr5g1064 213 Pfam Expansin C-terminal domain 121 198 IPR007117 -
Tpr5g1064 213 PANTHER EXPANSIN-A21-RELATED 11 213 - -
Tpr5g1064 213 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 130 209 IPR007117 -
Tpr5g1064 213 PRINTS Expansin/Lol pI family signature 9 27 IPR007118 GO:0005576
Tpr5g1064 213 PRINTS Expansin/Lol pI family signature 31 49 IPR007118 GO:0005576
Tpr5g1064 213 PRINTS Expansin/Lol pI family signature 103 119 IPR007118 GO:0005576
Tpr5g1064 213 PRINTS Expansin/Lol pI family signature 157 171 IPR007118 GO:0005576
Tpr5g1064 213 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Tpr5g1064 213 SUPERFAMILY PHL pollen allergen 117 209 IPR036749 -
Tpr5g1064 213 PRINTS Expansin signature 22 36 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 49 60 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 63 73 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 78 95 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 95 108 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 119 131 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 131 152 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Tpr5g1064 213 PRINTS Expansin signature 195 211 IPR002963 GO:0009664
Tpr5g1064 213 Gene3D - 3 115 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1064 Tpr-Chr5 21432024 21433059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1064 11 213 Expansin Gene Family AT5G39280 58.049 6.16e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1064 - - zju:107415875 294.664