Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1048 AACTGTGGAGAAAGGGGTCATATGTCTTATGATTGCCCGAAGAAGGGAGATAGGTGTAAGAATTGTGGAAAGCTGGGCCACAAGACCGAGGTTTGCAGAGTAAAAGTGGTGTGTTTCAATTGTGGTGAAGAAGGCCACAAGAGTCCGACTTGTAAGAAGCCCAAGAAGGTGATGGGCAAGGTGTTTGCTTTGAGTGGAGAGGATGCTAGCCTTGAGGACAATCTCATTAGAGGTACGTGTTTCATCTATAACACTCCTTTAATTGCGATTATAGATACGGGAGCGACACATTCTTTTATTTCTTTGGATTGTGCGAAGCGTCTTAGTATTCCTTTAACGGATATGACGGGTAGGATGGAAATAGAAACTCCTGCTAATGGTTCAGTGACTACTCGACAAGTATGTCGTAACTGCCCCGTAACCATTTTTGGTAGGCACTTTGGTATGGATTTAGTGTGTATTCCACTTAGTGGTATGGATGTAATTTTTGGTATGAATTGGTTAATCTTCAACCGAATTCATATCAACTGTCGTGAGAAGGCCGTTGTTTTTCCGAAGCCGGAGGAGAACTTGCATTTGATGAGCGGGAAGGAAGTATCGGAAGCGTTGAAAGAACATGCCGAGATGTTCGTGATGTTTGCATCATTGAAACTCGAAGGGGGAGTTAAGATAGAAGAGTTACCGATCGTTTGTGAATTCCCAGATGTGTTTCCGGATGATATATCTGACGTGCCTCCAAAGCGAGAGGTAGAGTTTTCTATCGACCTAGTACCTGGAACTAGTCCGATATCGATGGCGCCGTATCGAATGTCAGCGTCAGAATTGAATGATGTTTCGCCGTGGGGAGCGCCGGTATTGCTTGTAAAGAAGAAAGATGGAAGCATGAGATTATGTATAGACTATCGTCAGTTGAACAAAGTGACGATCAAGAATAAATAT 939 0.4345 NCGERGHMSYDCPKKGDRCKNCGKLGHKTEVCRVKVVCFNCGEEGHKSPTCKKPKKVMGKVFALSGEDASLEDNLIRGTCFIYNTPLIAIIDTGATHSFISLDCAKRLSIPLTDMTGRMEIETPANGSVTTRQVCRNCPVTIFGRHFGMDLVCIPLSGMDVIFGMNWLIFNRIHINCREKAVVFPKPEENLHLMSGKEVSEALKEHAEMFVMFASLKLEGGVKIEELPIVCEFPDVFPDDISDVPPKREVEFSIDLVPGTSPISMAPYRMSASELNDVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNKY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1048 313 Pfam Retroviral aspartyl protease 57 189 - -
Tpr5g1048 313 SUPERFAMILY Retrovirus zinc finger-like domains 18 55 IPR036875 GO:0003676|GO:0008270
Tpr5g1048 313 Gene3D - 35 82 - -
Tpr5g1048 313 Gene3D - 1 34 - -
Tpr5g1048 313 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 89 313 - -
Tpr5g1048 313 SMART c2hcfinal6 37 53 IPR001878 GO:0003676|GO:0008270
Tpr5g1048 313 SMART c2hcfinal6 1 14 IPR001878 GO:0003676|GO:0008270
Tpr5g1048 313 SMART c2hcfinal6 18 34 IPR001878 GO:0003676|GO:0008270
Tpr5g1048 313 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 241 313 - -
Tpr5g1048 313 Pfam Zinc knuckle 37 53 IPR001878 GO:0003676|GO:0008270
Tpr5g1048 313 Pfam Zinc knuckle 1 14 IPR001878 GO:0003676|GO:0008270
Tpr5g1048 313 PANTHER - 89 313 - -
Tpr5g1048 313 ProSiteProfiles Zinc finger CCHC-type profile. 38 53 IPR001878 GO:0003676|GO:0008270
Tpr5g1048 313 SUPERFAMILY Acid proteases 74 175 IPR021109 -
Tpr5g1048 313 CDD retropepsin_like 79 168 - -
Tpr5g1048 313 SUPERFAMILY DNA/RNA polymerases 229 313 IPR043502 -
Tpr5g1048 313 Gene3D Acid Proteases 83 200 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1048 Tpr-Chr5 20890678 20891667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1048 1 69 C2H2 Transcription Factor Family AT5G20220 36.364 2.98e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1048 - - cam:101511211 322.013