Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1019 ATGCAGAAGAAATCGTCGTTACCGTTGAGCGATGCCATTACGAACAAGAAGAAGGTGCAATTGTGTAGCAAGGAATCGCTCGTGAAGCTTCTAAGATGGCATTTTGGGTACTCTGATTTTAGGGGCATGCAATTGGAAGCTATTCAAACCGTCCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCAACTGGAGGAGGAAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAAGTAGGAATTGTGCTTGTAGTTTCTCCTTTAATAGCCCTAATGGAAAACCAAGTAATGGCACTAAAGGAAAAAGGAATCGCGGCAGAGTTTCTCTCCTCAACAAAAACGGCTAATGCAAAAGATAAGATATACGAGGACCTTGATTCTGGAAAACCATCTACAAGGCTGCTATATGTGACTCCGGAATTGATAGCAACCCCAGGGTTTACGTCAAAATTGAAAAAGATTTATTCCAGGGGGTTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCTTCTTGGGGTCATGATTTCAGACCTAGCTATCGTAAGCTTTCAAATCTGAGAAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCTGCTCCTAAGGTTCAAAAGGATGTAGTGGAATCCTTGCAGATGCAAAATGCATTAATACTGAAGACTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGAAAATGCTTATGCTGACTTATCTGATAGACTCAAATCTATGGGAGATGTCTGTGCGATAATTTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAGGTCATCTATCCCAAAGAGGCATCTCTTGTGCTGCTTATCATGCAGGACTGAATAATAAAATGCGAACATCCGTGCTGGAAGATTGGATTTCTTCAAAAACCAAAGTTGTTGTTGCCACTGTTGCTTTTGGGATGGGTATTGATAGAAAGGATGTGAGAATTGTGTGCCACTTCAATATTCCAAAGTCAATGGAGGCATTCTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAATTGCCCTCAACAAGTCTGTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAATTTATATTGCGCAACTCAGGTAGCAAGAAGTCACAATCATCAAGTTCACAAGAAGAATCAACCAGAATTTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGTGAAGGACCTGGATGTCGTAGGAAAATGATTCTCGAGAGTTTTGGGGAGCAGGTAACACCATCATTATGTAAAAAAACATGCGACTCCTGTAGACACCCAAACATAGTTGCTAGAAATTTGGAGGATCTCACAGCTGCGTGTGCTCTACGCCAGAAAGGCGGTTCTCGAGTTTTCATCACCAGTTCCACTGATGCAATTGATGGACTACAGTTATCTGAATTCTGGAATAGAGATGACGAAATAAGTGGATCAGAGGAAGATATTTCCGACTCCGATACTGACGGTAATGAGGTTGTCAACAATCTAGCGCGGTCAAAGGCTCAATTCAGACTGGGAGTAAATGAAAAGCTTAATTTTTTACAGAGGGCAGAAGAAAACTACTATCGAAATGATAACGCTAATAGACAGAGCAACAAAGTTGACAAGAATGCTATTTCTGATGCATTGCGAGGAGCAAGCAGGGAGAGATTACAAAATGCTTTAAAACAGGCTCAGCAACGGCTTGACGACTTTAGGATTGAAATGGAAACCTCGGCATCTCTTCTCGAAGATGAATGCTACAAGAAATATGGCAAGACTGGAAAATCATTCTATTACTCTCAAGTGGCAAGTACTATCAGGTGGTTGACAACTACAAGTTCTGTCGATCTCATGAACCGACTTCGTGCAATTGATGCCTCTACATCACTGAATGTCTTCTCTGAAGCTGAACATCCCGTCACACCACCACCTGCTTCAGATCATTGTACAAAGGAAGAAGCTAGCAATGAGATTCCAGACAATGCTGTAACAGAAACAATCCCATGTGATGTGACAATGGAAAGTTCTTATGATACAAACTTGCCACCTATACCATCCTTTGCTGAATTCGTAAATAGTAAGAAACCGAAAAGGGATCAATCAAGTGACACAAAAAAACACTCGTCAAGAGTAGAAAAGAAGAAGAGGATACAGTAG 2178 0.4105 MQKKSSLPLSDAITNKKKVQLCSKESLVKLLRWHFGYSDFRGMQLEAIQTVLSGRDCFCLMPTGGGKSMCYQIPALAKVGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTKTANAKDKIYEDLDSGKPSTRLLYVTPELIATPGFTSKLKKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSNLRSHLPDVPILALTATAAPKVQKDVVESLQMQNALILKTSFNRPNIYYEVRYKDLLENAYADLSDRLKSMGDVCAIIYCLERSMCDDLSGHLSQRGISCAAYHAGLNNKMRTSVLEDWISSKTKVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILRNSGSKKSQSSSSQEESTRISLTAFNQMVEYCEGPGCRRKMILESFGEQVTPSLCKKTCDSCRHPNIVARNLEDLTAACALRQKGGSRVFITSSTDAIDGLQLSEFWNRDDEISGSEEDISDSDTDGNEVVNNLARSKAQFRLGVNEKLNFLQRAEENYYRNDNANRQSNKVDKNAISDALRGASRERLQNALKQAQQRLDDFRIEMETSASLLEDECYKKYGKTGKSFYYSQVASTIRWLTTTSSVDLMNRLRAIDASTSLNVFSEAEHPVTPPPASDHCTKEEASNEIPDNAVTETIPCDVTMESSYDTNLPPIPSFAEFVNSKKPKRDQSSDTKKHSSRVEKKKRIQ* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1019 725 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Tpr5g1019 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Tpr5g1019 725 MobiDBLite consensus disorder prediction 699 715 - -
Tpr5g1019 725 MobiDBLite consensus disorder prediction 643 664 - -
Tpr5g1019 725 Gene3D - 230 456 IPR027417 -
Tpr5g1019 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 375 IPR027417 -
Tpr5g1019 725 Pfam RecQ zinc-binding 367 438 IPR032284 -
Tpr5g1019 725 SMART helicmild6 273 354 IPR001650 -
Tpr5g1019 725 Pfam Helicase conserved C-terminal domain 260 352 IPR001650 -
Tpr5g1019 725 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 709 - -
Tpr5g1019 725 Gene3D - 2 229 IPR027417 -
Tpr5g1019 725 CDD SF2_C_RecQ 230 363 - -
Tpr5g1019 725 Coils Coil 561 588 - -
Tpr5g1019 725 SMART ultradead3 36 238 IPR014001 -
Tpr5g1019 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 394 IPR001650 -
Tpr5g1019 725 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 4 709 - -
Tpr5g1019 725 CDD DEXHc_RecQ 29 229 - -
Tpr5g1019 725 MobiDBLite consensus disorder prediction 694 725 - -
Tpr5g1019 725 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 30 445 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1019 Tpr-Chr5 20335981 20346627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1019 33 377 Eukaryotic Initiation Factors Gene Family AT3G19760 21.763 4.01e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1019 - K10901 gmx:100819601 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1019 5 20335981 20346627 Tpr5g1019 5 20335981 20346627 ECH