Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0989 ATGGATGCTAAATTTGATGGAAAAAATAAGCATCTGTATGGACCAGTAGTGCCTGAGTTGAAGGGTGGTAGTGTTGGAATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTAGAAATCGTCAACTTTTACAGGTTGATCCTGAAGTATCTCAAAATGTTGATGCTTCTAAAAATTTGGCTTCTGGTGAAAGAAGTAGAGAATTGGAGAAGAGAAGGAGGGATTTTGTTGGTGAAGGGTTGGAGATGAATGATGATATTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGAGAGGAAAAAAGTGGTAAGCAAATGAAGATTGGTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAGCGCAAAGGATTACCATCGTCGTCACAAAGTTTGTGATGTGCATTCTAAGGCTAGTAAAGCGCTGGTTGGTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTTCATGTTCTTGATGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTGCTGGCCATAATAAGAGGAGGAGGAAGACACATCCTGATGGTGCTGAAGTTAATGGAGGTCCTCCGAATGAAGAAAGGGGCAGTAGCTATCTGTTGATGAGTCTACTAAGGATACTGTCTAATATGCACTCAAGTGGAGAAGATCATACAAGAAACGTGGATGTCATATCTCGTCTGGTTGGGAACCTGACAAGTTTAGCTGGTACATTTAACGGAAGAAATATAACCTCCTTATTGGTGGGACCTCAAGATTTAGTAAAAGCGGGGACATCTGGAGCTGCACAGTATATTCCAAACTCAAATGCAAATGGTGCTGAACCACCAAGACCTATTGATTCTCGTGTTGAAATGAGTAATGGTCTAATCCGTCAGGATCCTCCCGAGTCTAGGTTACTGTGTGCGACAGTTCCTGTCAATCATACGACACAAAAAGGTATACCTTTAAGCAGGGTTGGAGGAGTAGGATGTTTAAAACCTCCTTTGGTACCACACTCGTCAAATGTACTTCCTTCAAGGGGCAGCCTTCCACCTCGACCAGTTGGCGCAGAGACTACAGCTGGAAGAAATGGGTTAAGTAATATTGACCTGAATAGTGTATATGATGACGTGGAGGATTATGTTGAGAACCCCACGAATTCTCGTCCGCATGTGGCTTTAGGGGTTGGGTCCCATGGTCATCCTTCACCGGTACAATGTGATTCTCTCAAGTCAAGTCCGCCACAGACGAGTAGAAACTCAGATTCAACCTCTTCCCAGTCACCATCGAGTTCTAGCGGAGAAGGGCAGAGCCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAGTGATTTCCCTCTTGTTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGACCGGGATGTATTGTTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGAATGAGCTATGCTATAATCTGGGGTCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTCTTTGGAGAACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAGGTGGTCTTAGACGTGCCATTGCATCTTGGAAGCCCACAAAATTGTCAGATTTTGTGCGTTAAACCCCTTGCTGTTTCTGCAAGTGCAGACGTAAAATTTACTGTGAAAGGGTTAAACCTTTTCCTGTCCAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGAGGGTATGTGTAATGATTTGATTGATGGTGCGGATGCAGCTATCGGACATCACGAGCTTCAGAATCTCATTTTCTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATGGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCCGAGCCTGAAGTTTGTTCCGAGATATGTAATCTGGAGACCGTCATTGAAGCAGCAGAGACTGCTGATGATGTCCAGATCAAAGCCAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTGAAATTTAGGCTAGGGTCAATGGCACCTGTTCAAGATCCCTTCCACTTTAATCGCTATTCATGGCTTGTCGGCTTCTCTATGGACCACGATTGGTGCGCCGTGATGAAAAAACTCTTGGGCATTATCTTTGAGGGTGAAGTTGATACTGGAGAACATACCTCGGCAGAGCTTGCGTTGTTAAACATGGGTCTTCTTCACAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAACTTTGTGCCAGTTAATGCGTCAGATGGTGGAGACAGTAAAGAGATGCTACTCAACAAGTCGCCTGACAGATTCCTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATATTGCAGCAAGTATGAATGGCTATGAGAATGTATTGGATGCGTTAATTGATGATCCGGGAAAGGTAGGAATTGAGGCATGGAAAAGTGCTAAAGACAACACAGGTTTGACACCCAATGACTATGCATCCCTTAAGGGCCACTACTCCTACATTCAACTTGTGCAGAGGAAAACAAGCAAAAACGACCAAACACATGTCCTTGACATTCCTGGCACCCTTGTAGACGGAAACACGAAGAAACAATCAGACGTGCATAAGTCGTCAAAAGTTTTAAGTTTCCATACAGAGAAGATTGCAACAACAGCAATGCCAAATCATTGTGGGCTATGCCAACAGAAGTTGGCCCACAGCAGCAGCGGCGGTATGAGGAGGGCACTTGTTTATAGGCCGGCGATGCTTTCAATGGTTGCAATTGCAGCTGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCGCCGAGAGTTTACTATGTTTTCCAGCCTTTCAGCTGGGAATCATTGGACTATGGTTCGATATAA 3090 0.4385 MDAKFDGKNKHLYGPVVPELKGGSVGMESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLLQVDPEVSQNVDASKNLASGERSRELEKRRRDFVGEGLEMNDDIGSLNLNLGGQVYPIMEGEEKSGKQMKIGVTTSNRAVCQVEDCRADLSSAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLDEFDEGKRSCRRRLAGHNKRRRKTHPDGAEVNGGPPNEERGSSYLLMSLLRILSNMHSSGEDHTRNVDVISRLVGNLTSLAGTFNGRNITSLLVGPQDLVKAGTSGAAQYIPNSNANGAEPPRPIDSRVEMSNGLIRQDPPESRLLCATVPVNHTTQKGIPLSRVGGVGCLKPPLVPHSSNVLPSRGSLPPRPVGAETTAGRNGLSNIDLNSVYDDVEDYVENPTNSRPHVALGVGSHGHPSPVQCDSLKSSPPQTSRNSDSTSSQSPSSSSGEGQSRTDRIVFKLFGKDPSDFPLVLRSQILSWLSHSPTEIESYIRPGCIVLTICLRLENSAWNELCYNLGSSLRKLLAASNDSLWRTGWIYTRVRHSVAILYNGQVVLDVPLHLGSPQNCQILCVKPLAVSASADVKFTVKGLNLFLSSTRLLCALEGKYLVEGMCNDLIDGADAAIGHHELQNLIFSCHIPNMTGRGFIEVEDNGLSSCSFPFIVAEPEVCSEICNLETVIEAAETADDVQIKAKLMEEKTRAMNFVQEMGWLLHRIRVKFRLGSMAPVQDPFHFNRYSWLVGFSMDHDWCAVMKKLLGIIFEGEVDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPVNASDGGDSKEMLLNKSPDRFLFRPDTVGPAGLTPLHIAASMNGYENVLDALIDDPGKVGIEAWKSAKDNTGLTPNDYASLKGHYSYIQLVQRKTSKNDQTHVLDIPGTLVDGNTKKQSDVHKSSKVLSFHTEKIATTAMPNHCGLCQQKLAHSSSGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLDYGSI* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0989 1029 MobiDBLite consensus disorder prediction 429 469 - -
Tpr5g0989 1029 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Tpr5g0989 1029 ProSiteProfiles Ankyrin repeat region circular profile. 851 874 - -
Tpr5g0989 1029 MobiDBLite consensus disorder prediction 206 232 - -
Tpr5g0989 1029 Pfam SBP domain 142 215 IPR004333 GO:0003677
Tpr5g0989 1029 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Tpr5g0989 1029 SMART ANK_2a 851 881 IPR002110 GO:0005515
Tpr5g0989 1029 SMART ANK_2a 891 919 IPR002110 GO:0005515
Tpr5g0989 1029 SMART ANK_2a 795 825 IPR002110 GO:0005515
Tpr5g0989 1029 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 21 1028 - -
Tpr5g0989 1029 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Tpr5g0989 1029 MobiDBLite consensus disorder prediction 436 469 - -
Tpr5g0989 1029 Pfam Ankyrin repeats (3 copies) 800 911 IPR002110 GO:0005515
Tpr5g0989 1029 Gene3D - 786 926 IPR036770 -
Tpr5g0989 1029 ProSiteProfiles Ankyrin repeat profile. 851 874 IPR002110 GO:0005515
Tpr5g0989 1029 MobiDBLite consensus disorder prediction 373 395 - -
Tpr5g0989 1029 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 1028 IPR044817 GO:0003677
Tpr5g0989 1029 SUPERFAMILY Ankyrin repeat 798 913 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0989 Tpr-Chr5 19652394 19661362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0989 20 1028 SBP-box Gene Family AT3G60030 45.570 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr5g0989 SBP 5.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0989 - - gmx:100792774 1528.46