Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0988 ATGAGTACTCCTCCTCCTCCTCCTCTTATTTTCTGCTTGATTATCTTCTTCCTAAGTCTCCTCTTACGATTACATTCAGCTTTTGAATTTGACAAGGTAACACGTTTACCTAATCAACCAAAAGTTGAATTTAATCAATTTGCTGGGTACATCACCATTGATGATACCCGAGATAATCAGAAAGCACTCTACTATTATTTCGTTGAAGCCGAAGTTGATGCTACTTCCAAACCGGTTGTTCTCTGGTTAAATGGGGGCCCTGGATGTTCATCGGTTGGTGTTGGGGCTTTTCAAGAACACGGCCCCTTTCAACCAACCAAGGAGGGTCATCTTCTTAGAAATCCATTCAGTTGGAACAGAGAGGCAAATATGATATATTTAGACTCCCCCGTCGGTGTTGGTTTCTCGTTTTCGGCCAACACCACTTATTATTTTCTCCTCAATGATCGAATGGCAGCAAGGGATAATTTGTTGTTTCTTGAGGGATGGTTCAACAAATTCCCCTCATACAGAAACAATGAGTTCTTCATCACCGGAGAAAGTTATGCAGGTCACTTTGCACCTCAGCTTGCCCATCTCATCATCCAAACCAAATCCAAAATCAACCTGAAAGGGATCGCCATTGGCAACCCCCTTCTTGAGTTCAACACAGATTTCAGTTCCACAGCTGAATTTCTGTGGTCTCATGGACAAATATCAAAGTCAACATTTGAAATGTTGAAATCGGTATGCAGCTACGCCGAAATTCAAAGGCAGAGCATAAATTTCACACTTAGCACAGCATGTGCTAAAGTGAATCTGCTAGTGCAAACAGAGGTCACTGCATATACTGATGCATTTGATGTGATTGTCGATGTTTGTCTACCATCAAAAAAGCAACAGTCATCTATGTTGACTCATCATCTGTATGCTGGAAAGGGGACATGTTCGGCTGAGGAAACAGCCAGATACTTCAATAGGAAAGAAGTTCAGCAAGCTCTACATGCTCACCTTCAAGAAGGGGTGACAAATTGGTCTACATGCAGTCAGGTTCTCATATATGACTTTAAAAATCTTGAGAATCCTACCATCACTTTGCTAGGAACCCTTATTAAGTCAGGTGTAAGGGTTCTAGCCTTTAGTGGAGATCAAGATTCAGTCATTCCATTTATTGGGACACAGTGGAGATTCAAAACACGTAGAGCACAAACAACACCAGTAGGTGGATGGACACAAGTCTATGGTGGCAAATTATCATTTGCAACCATAAGAGGGGCAGGGCATGCAACTTCGTCTACTCAACCGGGCAGGTCACTGGTGCTGTTCAAATATTTTTTGAAAGGAACCCCACTTCCCTATATACATTGA 1347 0.4209 MSTPPPPPLIFCLIIFFLSLLLRLHSAFEFDKVTRLPNQPKVEFNQFAGYITIDDTRDNQKALYYYFVEAEVDATSKPVVLWLNGGPGCSSVGVGAFQEHGPFQPTKEGHLLRNPFSWNREANMIYLDSPVGVGFSFSANTTYYFLLNDRMAARDNLLFLEGWFNKFPSYRNNEFFITGESYAGHFAPQLAHLIIQTKSKINLKGIAIGNPLLEFNTDFSSTAEFLWSHGQISKSTFEMLKSVCSYAEIQRQSINFTLSTACAKVNLLVQTEVTAYTDAFDVIVDVCLPSKKQQSSMLTHHLYAGKGTCSAEETARYFNRKEVQQALHAHLQEGVTNWSTCSQVLIYDFKNLENPTITLLGTLIKSGVRVLAFSGDQDSVIPFIGTQWRFKTRRAQTTPVGGWTQVYGGKLSFATIRGAGHATSSTQPGRSLVLFKYFLKGTPLPYIH* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0988 448 Pfam Serine carboxypeptidase 40 441 IPR001563 GO:0004185|GO:0006508
Tpr5g0988 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Tpr5g0988 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Tpr5g0988 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Tpr5g0988 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 411 424 IPR001563 GO:0004185|GO:0006508
Tpr5g0988 448 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Tpr5g0988 448 SUPERFAMILY alpha/beta-Hydrolases 36 445 IPR029058 -
Tpr5g0988 448 PANTHER CARBOXYPEPTIDASE 9 432 - -
Tpr5g0988 448 Gene3D alpha/beta hydrolase 26 445 IPR029058 -
Tpr5g0988 448 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 432 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0988 Tpr-Chr5 19629072 19634970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0988 315 444 Calmodulin-binding Proteins AT2G22960 28.276 6.34e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0988 K16297 - gmx:100805028 511.916