Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0985 AACTGTGGAGAACGGGGTCATATGTCTTATGATTGCCCGAAGAAGGGAGATAGGTGTAAGAATTGTGGAAAGCTGGGCCACAAGACCGAAGCTTGCAGAGTAAAAGTGGTGTGTTTCAATTGTGGTGAAGAAGGCCACAAGAGTCCGACTTGTAAGAAGCCCAAGAAGGTGATGGGCAAGGTGTTTGCTTTGAGTGGAGAGGATGCTAGCCATGAGGACGATCTCATTAGAGGTACGTGTTTCATCTATAACACTCCTTTAATTGCGATTATAGATACGGGAGCGACACATTCTTTTATTTCTTTGGATTGTGCGAAGCGTCTTAGTATTCCTTTAACGGATATGACGGGTAGGATGGAAATAGAAACTCCTGCTAATGGTTCAGTGATTACCCGACAAGTATGTCGTAATTGCCCCGTAACCATTTTTGGTAGGCACTTTGGTATGGATTTAGTGTGTATTCCACTTAGTGGTATGGATGTAATTTTTGGTATGAATTGGTTAAACTTCAACCGAATTCATATCAACTGTCGTGAGAAGGCCGTTGTTTTTCCGAAGCCGGAGGAGAACTTGCATTTGATGAGCGGGAAGGAAGTATCGGAAGCGTTGAAAGAACATGCCGAGATGTTCATGATGTTTGCATCATTGAAACTCGAAGGAGGAGTTAAGATAGAAGAGTTACCGATCGTTTGTGAATTCCCAGATGTGTTTCCGGATGATATATCTGACGTGCCTCCAAAGCGAGAGGTAGAGTTTTCTATCGACCTAGTACCTGGAACTAGTCCGATATCGATGGCGCCGTATCGAATGTCAGCGTCTGAGTTGAATGATGTTTCGCCATGGGGAGCGCCGGTATTGCTTGTGAAGAAGAAAGATGGAAGCATGAGATTATGTATAGACTATCGTCAGTTGAACAAAGTGACGATCAAGAATAAATAT 939 0.4345 NCGERGHMSYDCPKKGDRCKNCGKLGHKTEACRVKVVCFNCGEEGHKSPTCKKPKKVMGKVFALSGEDASHEDDLIRGTCFIYNTPLIAIIDTGATHSFISLDCAKRLSIPLTDMTGRMEIETPANGSVITRQVCRNCPVTIFGRHFGMDLVCIPLSGMDVIFGMNWLNFNRIHINCREKAVVFPKPEENLHLMSGKEVSEALKEHAEMFMMFASLKLEGGVKIEELPIVCEFPDVFPDDISDVPPKREVEFSIDLVPGTSPISMAPYRMSASELNDVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNKY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0985 313 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 77 271 - -
Tpr5g0985 313 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 278 313 - -
Tpr5g0985 313 ProSiteProfiles Zinc finger CCHC-type profile. 18 33 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 CDD retropepsin_like 79 169 - -
Tpr5g0985 313 Gene3D Acid Proteases 82 201 IPR021109 -
Tpr5g0985 313 SUPERFAMILY Retrovirus zinc finger-like domains 17 55 IPR036875 GO:0003676|GO:0008270
Tpr5g0985 313 SMART c2hcfinal6 37 53 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 SMART c2hcfinal6 18 34 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 SMART c2hcfinal6 1 14 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 ProSiteProfiles Zinc finger CCHC-type profile. 38 53 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 PANTHER - 77 271 - -
Tpr5g0985 313 PANTHER - 278 313 - -
Tpr5g0985 313 Gene3D - 1 34 - -
Tpr5g0985 313 Gene3D - 35 81 - -
Tpr5g0985 313 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 241 313 - -
Tpr5g0985 313 Pfam Retroviral aspartyl protease 57 189 - -
Tpr5g0985 313 Pfam Zinc knuckle 37 53 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 Pfam Zinc knuckle 1 14 IPR001878 GO:0003676|GO:0008270
Tpr5g0985 313 SUPERFAMILY DNA/RNA polymerases 229 313 IPR043502 -
Tpr5g0985 313 SUPERFAMILY Acid proteases 74 176 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0985 Tpr-Chr5 19492055 19493044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0985 1 72 C2H2 Transcription Factor Family AT5G20220 34.444 3.59e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0985 - - cam:101511211 323.553