Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0963 ATGTCGACTGAAGTACGGGATGAAGTTGATATTGATGAAATTGAACTTCTTACAAATGTTGATTTCCCTCAAATATTTGATAGTGATGATGATGCTTATAATTTTTACTCTTCGTTTGCACAAAGAATTGGTTTCTCAATTAGACGTCATCACGTTTATAGAAACACTACTGATGAGGGAAATCCACAAACAGTTTACAAAAGAGAGTTCGTTTGCCATCGATCCGGGGTTTCTAAACCAGTCAAAGTTAATGAACTGGAAAGTCAAAGGAAACGGAAAGCTTCAAGGTGTAGTTGTAGTGCGAGATTGGTGGTTGCTAAAGAGACAATTGGATCGGAAGAAAAATGGGTGGTAATATATTTCAACAATGTCCACAACCATGATTTGTTAGATGAGAAAGAGGTTCAATTTCTCCCTGCTTATCGTAACATCCCGGTTGTTGACCAAAACCGTATACTAATGATGCATAAAGCTGGTTGTTCCATTAATGTCACAATGAGATTGCTTGAATTAGAGAAAGGAATAGATGTAGGTAGTCTACCATTTATGGATAAAGATATTAGGAATTTCCTTCAAAACCAAAATGGTATTGACAAACAAAATGATGCTTTAGATGTCTTGAAATTGTGTAAAGGGTTGAAAGAGTTAGATGATGCCTTCCAATATGATTACACAATAGATGAGAATAAGAAGTTGGAACACATTATTTGGGCATTTGGTGATTCAATCCGTGCATATGAATCTTTCGGGGATGTGGTTGTCTTTGATACTACTTATCGAATAAATCGTTATGATATGCCACTTGGAATATGGCTTGGAGTTGACAATCATGGGAATTCAGTTTTTTTTGGTTGTGTTCTATTACGAAATGAGAAGATTTCTTCCTTCACATGGGCTTTAAAGAATTTCCTAGCTTTTGTCAAAGGAAAGAATCCACAAACAATTCTTACAGATCAAGATCCCTCGCTTAAAGAAGCCATTGCAAATGAATTTCCGAACACAAAACATGCCTTTTGCATATGGCACATCTTGGCAAAGTTGCCAAGTTGGTTTTCGTTTGTATTAGGTGCAAGATATAATGACTTTAAATCTGAGTTTTTCAAGGTGTACCATTTAGATTGTGAAGATGATTTTGAACAATATTGGAAATCCATGGTTGCACAATTTGGTCTAAGTAACGATATACATATTAAATTGTTGTATTCTCTTCGCCAACGATGGGCTCTACCTTATTTGAAGGACTTTTTTTTTGCTGGGATGACAACAACTGGACGTTCGGAATCGATAAATTCATATATAAAACACTTCTTGGATGCCAAAACAAGTTTGACTGATTTTATTACTAGGGTTGGTGTTGCTGTCCAAATTAGGAATCAAGTTGGAGAGGAAGCAAGAATGCGTCAAAAGTATCATAATCATCTACTTAAAACAAGTTTTCCAATGGAGGAACATGTTGCATCTATACTCACACCTTATGCTTTTGGGTTGATTCAAATTGAGATTGAGTTATCTACAAAATACGCTGCAACTGAAACAAACAGTGGCTCTTTTATTGTGAAGCATCACACCAAAGATGATGGAGGTCGTCTTGTAACTTGGATAGAAGGTCAAGAATCAATTCGTTGCTCTTGTAAGGAATTTGAGTTTTCTGGAATATTGTGCAGGCATGCTATTCGAGTGCTTCTAATGAAAAATTATTTTCACATACCTTCAAAGTATCTTCCTTTTCGATGGAGACGTGAAAGTTCATTGATCCCAAGATCTAGGCACATAGTAAACAACAATGATGTCTCCTCTTCTGAGTTTCATTCTCTGATTCAATGTCTTGAATATGAATCTTTAAAAACAAAAGAACGGAAACAAATTGCTACTAAAGGGTTGGAGGATCTTATCCGAGAGATAAAAGGAATGTCCGAAAGTCATGAAGATCAAATTGGTTTGGAAGTTGTTCCAAATAATGATGAATGTGATGTTGGAATTCCAGTTAGAACTAGAAGCAAAGGTCGACCAAAAGGTTCAAAGGCAAAAGTAGTAGTTGAAGTTGTTTCAAATAATGATGAATGTGATGTTGGAAATCCAGTTAGAACCAAAAGCAAAGGTCGACCAAAACGATCAAGGCCAAAAGGAGGAGTTGAAGCTGCAACCAAGATTCGCCATTGTCTTTTTCCGAATTGTGGTGCAACCGGCCATGACACACGGAATTGTCCAAACAAAAGGAAACATAATGACATGTTGCCTAATGAATCACCTAATGTGTTCAAAAAGGGCTGGAGAAATTCATCTAATTAA 2289 0.3626 MSTEVRDEVDIDEIELLTNVDFPQIFDSDDDAYNFYSSFAQRIGFSIRRHHVYRNTTDEGNPQTVYKREFVCHRSGVSKPVKVNELESQRKRKASRCSCSARLVVAKETIGSEEKWVVIYFNNVHNHDLLDEKEVQFLPAYRNIPVVDQNRILMMHKAGCSINVTMRLLELEKGIDVGSLPFMDKDIRNFLQNQNGIDKQNDALDVLKLCKGLKELDDAFQYDYTIDENKKLEHIIWAFGDSIRAYESFGDVVVFDTTYRINRYDMPLGIWLGVDNHGNSVFFGCVLLRNEKISSFTWALKNFLAFVKGKNPQTILTDQDPSLKEAIANEFPNTKHAFCIWHILAKLPSWFSFVLGARYNDFKSEFFKVYHLDCEDDFEQYWKSMVAQFGLSNDIHIKLLYSLRQRWALPYLKDFFFAGMTTTGRSESINSYIKHFLDAKTSLTDFITRVGVAVQIRNQVGEEARMRQKYHNHLLKTSFPMEEHVASILTPYAFGLIQIEIELSTKYAATETNSGSFIVKHHTKDDGGRLVTWIEGQESIRCSCKEFEFSGILCRHAIRVLLMKNYFHIPSKYLPFRWRRESSLIPRSRHIVNNNDVSSSEFHSLIQCLEYESLKTKERKQIATKGLEDLIREIKGMSESHEDQIGLEVVPNNDECDVGIPVRTRSKGRPKGSKAKVVVEVVSNNDECDVGNPVRTKSKGRPKRSRPKGGVEAATKIRHCLFPNCGATGHDTRNCPNKRKHNDMLPNESPNVFKKGWRNSSN* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0963 762 MobiDBLite consensus disorder prediction 692 712 - -
Tpr5g0963 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 640 IPR031052 GO:0006355
Tpr5g0963 762 Pfam MULE transposase domain 252 345 IPR018289 -
Tpr5g0963 762 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 24 640 - -
Tpr5g0963 762 SMART 26again6 540 567 IPR006564 GO:0008270
Tpr5g0963 762 Pfam FAR1 DNA-binding domain 34 130 IPR004330 -
Tpr5g0963 762 MobiDBLite consensus disorder prediction 738 762 - -
Tpr5g0963 762 Pfam SWIM zinc finger 536 565 IPR007527 GO:0008270
Tpr5g0963 762 ProSiteProfiles Zinc finger SWIM-type profile. 517 565 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0963 Tpr-Chr5 18987550 18990728 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g0963 FAR1 3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0963 - - var:108339217 801.971