Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0950 ATGGAAAACTATGATGAGTCTGCTGATGTTGATGTGGATTCCATTCATTCAAGTGAACGTGATTCATGGGACGAGGAGTTGGATGATGAAGAAAGTTATTCGATATCTAATATGAATCAAAGTTCAGTGGATGGCGATCATTCAGCTGATAATGGCAATGATGATGGAGATGCAGTTGGAGGCAATAGCCAGATAAGGAAAGGTGATAGTAGGGTAAGAGGTAGTGAAGGTAATAAAGTAATAAAAATGAAGCAGTTTGTATGCAACAAACACGGTGTAAGAGAGAAGAGACACTTAGTTAGGATAGATAGGAAATTAGAACATAGACGTTTGACCCGCACTAAATGTGGAGCCAGTCTTCGTGTGAAATACAAAGCTGAAAAGGATAGATATGTAGTTTCAGCTTTTGAAGAGACTCATAACCATGAATTAACCCCAGCTAGGTTTGTGCACTTACACCCCGTATATCGTAAAATTTCTGAAGTAGATAAGGCTCAGGTGGATAGTCTTCAGAAACGTGGCATTAGAACATGTCATATAATGGGGTACATGGTTGCACAGAAGGGTGGATATGCTGATGTTGGTTTTACAAAGAAAGATTTGTACAACTATTTTGATAAAAAAATGCGTGCTGTTATTAAAGATGGTGATGTTGTCGCAGCTTTAAACTACCTGAATATGAAGTCGTCTAGTGATCCCATGCTTTATGCTGAGTATGCTGTAGACAACGTTAATGGAAGAATGAAGACTCTTTTTTGGGCTGATGGGATTAGTAGGACCGACTATTTTTGTTTTGGTGATGTGCTTGCATTTGACACGACTTACAGGAAGAACAAGTACAACTATCCGTTGGTTGTATTTTCAGGGTGTAACCACCACTCTCAAACAATAATTTTTGGTGCTGCATTGGTGTCAGATGAAACGACGGAGACGTATAAGTGGGTGTTGAGGTGTTTCCTAGAATGCATGGAAGGTAAACAACCAAAAGCGGTGGTAACAGATGGGGATGGGGCAATGAGAGAGGCCATAAAACAGATTTTTCCTGATGCTAACCATAGGTTATGTGCTTGGCATTTGAATAAGAATGCAAGTGAGAATGTGAAGAACGGAAATAATTTTTTGGACGGTTTTTCAAAGGCCATGTACTCAAATTTTACAATAGATGAATTTGAAGAGTATTGGTCACAAATGATTAAAGAAAATGGAGTGCAAGGACATCCTTGGGTAGTCAAAACGTACGAGAATAGGTCACTGTGGGCTACTGCATATCTACGAGATAATTTTTTTGGACGTATAAGAACTACGTCGCAGTGCGAAGCTGTTAATGCAATAATTAAGAGTTATGTCAGGAAGCAAGGATGCATTTTTGAATTTATGAACAACTTTGATCAGGCTTTGAGAGATTATAGAAATAATGAGTTGGTTGCTGATTTTAAATCATCGTCTACAGATCCTGTGTTGTCGACGCAACTGCCTGTGATTGAGAGTCATGCTGGTAAAATATATACGGCGGAGCTTTTCAAAGAAGTTAGACATGAAATATTGAAAGCCGGTGAATTGATAGTTAGGGAGAAAAGCGAAGTTGGGGGTAGGAAGAATTATAGATTGACAAAATATTGTAAGGATGGTTATGAAAGAAGTGTTGTTTATGATGGTTCGACATTTGAGTGTTCATGTAAGAAGTTTGAGTCCCGTGGCATTCCGTGTTCTCATATTTTTTACGTAATGAAGGAAGAACACGTTGATCGTATCCCAAACAATTTGGTTTTGACGCGATGGACCAAGGATGCAAAAATTCAGTTTTTGAACAGCAGCAATTTTAATGATAATGTTGATTTGAATACGATTGCCGAAGCTCGTTTTGGTTCATATTGTACTGTTTTAACAGAGTTCTGCAAAGAAGCTTCAAAAAAAGATGGTGTTTATGCACAAATAATGGAAGACCTGATGCAGCTGAAAAAAAAGTATTGCAGTAAAGATGATGATGCAATCGGTACACAAAAGTCAGCAGTAGGCGATCCAGTTATGGTTAAGTGTAAAGGTGCTCCAAAGAAAAAGAATAATGTCGCAAAATCTGCCAGGCGCCGTTCAAATGGCAAAAATACAACTCCTAATTCGAAGAGATGTTCTGTAATTTTAATAAATCATTATTTGTTTGTCAGTTTTATATAA 2172 0.3794 MENYDESADVDVDSIHSSERDSWDEELDDEESYSISNMNQSSVDGDHSADNGNDDGDAVGGNSQIRKGDSRVRGSEGNKVIKMKQFVCNKHGVREKRHLVRIDRKLEHRRLTRTKCGASLRVKYKAEKDRYVVSAFEETHNHELTPARFVHLHPVYRKISEVDKAQVDSLQKRGIRTCHIMGYMVAQKGGYADVGFTKKDLYNYFDKKMRAVIKDGDVVAALNYLNMKSSSDPMLYAEYAVDNVNGRMKTLFWADGISRTDYFCFGDVLAFDTTYRKNKYNYPLVVFSGCNHHSQTIIFGAALVSDETTETYKWVLRCFLECMEGKQPKAVVTDGDGAMREAIKQIFPDANHRLCAWHLNKNASENVKNGNNFLDGFSKAMYSNFTIDEFEEYWSQMIKENGVQGHPWVVKTYENRSLWATAYLRDNFFGRIRTTSQCEAVNAIIKSYVRKQGCIFEFMNNFDQALRDYRNNELVADFKSSSTDPVLSTQLPVIESHAGKIYTAELFKEVRHEILKAGELIVREKSEVGGRKNYRLTKYCKDGYERSVVYDGSTFECSCKKFESRGIPCSHIFYVMKEEHVDRIPNNLVLTRWTKDAKIQFLNSSNFNDNVDLNTIAEARFGSYCTVLTEFCKEASKKDGVYAQIMEDLMQLKKKYCSKDDDAIGTQKSAVGDPVMVKCKGAPKKKNNVAKSARRRSNGKNTTPNSKRCSVILINHYLFVSFI* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0950 723 Pfam MULE transposase domain 268 362 IPR018289 -
Tpr5g0950 723 MobiDBLite consensus disorder prediction 33 47 - -
Tpr5g0950 723 PANTHER OS02G0262500 PROTEIN 72 703 - -
Tpr5g0950 723 SMART 26again6 555 582 IPR006564 GO:0008270
Tpr5g0950 723 Pfam FAR1 DNA-binding domain 72 145 IPR004330 -
Tpr5g0950 723 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 72 703 IPR031052 GO:0006355
Tpr5g0950 723 MobiDBLite consensus disorder prediction 1 76 - -
Tpr5g0950 723 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Tpr5g0950 723 MobiDBLite consensus disorder prediction 682 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0950 Tpr-Chr5 18585837 18588115 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g0950 MULE 4.4e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0950 - - ccaj:109792835 794.653