Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0925 ATGCGGAGCCACATTATGTGTAGTGGGTGTAGGAACCTCTTGCTTTACCCTAGAGGAGCGAGCAATGTTTGTTGTGCATTGTGCAACACAATTACCCCTGTTCTTCCTCCCGGAATAGAAATGTCACAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACTCTCGTGGAGCTACTAGTGTGCGATGTTCCTGCTGTAATACTCTAAATCTTGTACCAGATTGTAATCAAATGAGCCATATCCATTGTGGGAACTGCCGGACAACACTTATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCAATTTGTCACTATATCACTAATGTCTGCACGACCAACGGAAGGCCGCCAATTCCTGCAAAGAGACCTAATGAAACAACCGGCTCCGGAACGTCAAGACCCCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCCATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAACGTTGTTGTTGGCGTTACAACAGAGAAGAAATGA 513 0.4503 MRSHIMCSGCRNLLLYPRGASNVCCALCNTITPVLPPGIEMSQLYCGGCRTLLMYSRGATSVRCSCCNTLNLVPDCNQMSHIHCGNCRTTLMYPYGAPSVKCAICHYITNVCTTNGRPPIPAKRPNETTGSGTSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKK* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0925 170 MobiDBLite consensus disorder prediction 126 140 - -
Tpr5g0925 170 PANTHER LSD1-LIKE PROTEIN 1 168 - -
Tpr5g0925 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Tpr5g0925 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Tpr5g0925 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Tpr5g0925 170 Pfam LSD1 zinc finger 7 31 IPR005735 -
Tpr5g0925 170 Pfam LSD1 zinc finger 84 108 IPR005735 -
Tpr5g0925 170 Pfam LSD1 zinc finger 46 69 IPR005735 -
Tpr5g0925 170 MobiDBLite consensus disorder prediction 119 140 - -
Tpr5g0925 170 PANTHER PROTEIN LSD1 1 168 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0925 Tpr-Chr5 17832390 17842025 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tpr5g0925 zf-LSD1 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0925 - - gmx:100776394 291.582