Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0909 ATGTCGACTGAAGTAAGGGATGAAGTTGATATTGATGTAATTGAACTTCTTACAAATGTTGATTTCCCTCAAATATTTGATAGTGATGATGATGCTTATAATTTTTACTCTTCGTTTGCACAAAGAAGTGGTTTCTCAATTAGACGTCATCACGTTTATAGAAACACTACTGATGAGGGAAATCCAGAAACAGTTTACAAAAGAGAGTTCGTTTGCCATCGATCCGGGGTTTCTAAACCAGTCAAAGTTAATGAACTGGAAAGTCAAAGGAAACGGAAAGCTTCAAGGTGTAGTTGTAGTGCGAGATTGGTGGTTGCTAAAGAGACAATTGGGTCGGAAGAAAAATGGGTGGTAATATATTTCAACAATGTCCACAACCATGATTTGTTAGATGAGAAAGAGGTTCAATTTCTCCCTGCTTATCGTAACATCCCGGTTGTTGACCAAAACCGTATACTAATGATGCATAAAGCTGGTTGTTCCATTAATGTCACAATGAGATTGCTTGAATTAGAGAAAGGAATAGATGTAGGTAGTCTACCATTTATGGATAAAGATATTAGGAATTTCCTTCAAAACCAAAATGGTATTGACAAACAAAATGATGCTTTAGATGTCTTGAAATTGTGTAAAGGGTTGAAAGAGTTAGATGATGCCTTCCAATATGATTACACAATAGATGAGAATAAGAAGTTGGAACACATTATTTGGGCATTTGGTGATTCAATCCGTGCATATGAATCTTTCGGGGATGTGGTTGTCTTTGATACTACTTATCGAATAAATCGTTATGATATGCCACTTGGAATATGGCTTGGAGTTGACAATCATGGGAATTCAGTTTTTTTTGGTTGTAATTTCCTAGCTTTTGTCAAAGGAAAGAATCCACAAACAATTCTTACAGATCAAGATCCCTCGCTTAAAGAAGCTATTGCAAATGAATTTCCGAACACAAAACATGCATTTTGCATATGGCACATCTTGGCAAAGTTGCCAAGTTGGTTTTCGTTTGTATTAGGTGCAAGATATAATGACTTTAAATCTGAGTTTTTCAAGGTGTACCATTTAGATTGTGAAGATGATTTTGAACAATATTGGAAATCCATGGTTGCACAATTTGGTCTAAGTAACGATATACATATTAAATTGTTGTATTCTCTTCGCCAACGATGGGCTCTACCTTATTTGAAGGACTTTTTTTTTGCTGGGATGACAACAACTGGACGTTCGGAATCGATAAATTCATATATAAAACACTTCTTGGATGTTGGTGTTGCTGTCCAAATTAGGAATCAAGTTGGAGAGGAAGCAAGAATGCGTCAAAAGTATCATAATCATCTACTTAAAACAAGTTTTCCAATGGAGGAACATGTTGCATCTATACTCACACCTTATGCTTTTGGGTTGATTCAAATTGAGATTGAGTTATCTACAAAATACGCTGCAACTGAAACAAACAGTGGCTCTTTTATTGTGAAGCATCACACCAAAGATGATGGAGGTCGTCTTGTAACTTGGATAGAAAGTCAAGAATCAATTCGTTGCTCTTGTAAGGAATTTGAGTTTTCTGGAATATTGTGCAGGCATGCTATTCGAGTGCTTCTAATGAAAAATTATTTTCACATACCTTCAAAGTATCTTCCTTTTCGATGGAGACGTGAAAGTTCATTGATCCCAAGATCTAGGCACATAGTAAACAACAATGATGTCTCCTCTTCTGAGTTTCATTCTCTGATTCAATGTCTTGAATATGAATCTTTAAAAACAAAAGAACGGAAACAAATTGCTACTAAAGGGTTGGAGGATCTTATCCGAGAGATAAAAGGAATGTCCGAAAGTCATGAAGATCAAATTGGTTTGGAAGTTGTTCCAAATAATGATGAATGTGATGTTGGAATTCCAGTTAGAACTAGAAGCAAAGGTCGACCAAAAGGTTCAAAGGCAAAAGTAGTAGTTGAAGTTGTTTCAAATAATGATGAATGTGATGTTGGAAATCCAGTTAGAACCAAAAGCAAAGGTCGACCAAAACGATCAAGGCCAAAAGGAGGAGTTGAAGCTGCAACCAAGATTCGCCATTGTCTTTTTCCGAATTGTGGTGCAACCGGCCATGACACACGGAATTGTCCAAACAAAAGGAAACATAATGACATGTTGCCTAATGAATCACCTAATGTGTTCAAAAAGGGCTGGAGAAATTCATCTAATTAA 2208 0.3623 MSTEVRDEVDIDVIELLTNVDFPQIFDSDDDAYNFYSSFAQRSGFSIRRHHVYRNTTDEGNPETVYKREFVCHRSGVSKPVKVNELESQRKRKASRCSCSARLVVAKETIGSEEKWVVIYFNNVHNHDLLDEKEVQFLPAYRNIPVVDQNRILMMHKAGCSINVTMRLLELEKGIDVGSLPFMDKDIRNFLQNQNGIDKQNDALDVLKLCKGLKELDDAFQYDYTIDENKKLEHIIWAFGDSIRAYESFGDVVVFDTTYRINRYDMPLGIWLGVDNHGNSVFFGCNFLAFVKGKNPQTILTDQDPSLKEAIANEFPNTKHAFCIWHILAKLPSWFSFVLGARYNDFKSEFFKVYHLDCEDDFEQYWKSMVAQFGLSNDIHIKLLYSLRQRWALPYLKDFFFAGMTTTGRSESINSYIKHFLDVGVAVQIRNQVGEEARMRQKYHNHLLKTSFPMEEHVASILTPYAFGLIQIEIELSTKYAATETNSGSFIVKHHTKDDGGRLVTWIESQESIRCSCKEFEFSGILCRHAIRVLLMKNYFHIPSKYLPFRWRRESSLIPRSRHIVNNNDVSSSEFHSLIQCLEYESLKTKERKQIATKGLEDLIREIKGMSESHEDQIGLEVVPNNDECDVGIPVRTRSKGRPKGSKAKVVVEVVSNNDECDVGNPVRTKSKGRPKRSRPKGGVEAATKIRHCLFPNCGATGHDTRNCPNKRKHNDMLPNESPNVFKKGWRNSSN* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0909 735 Pfam SWIM zinc finger 508 538 IPR007527 GO:0008270
Tpr5g0909 735 SMART 26again6 513 540 IPR006564 GO:0008270
Tpr5g0909 735 MobiDBLite consensus disorder prediction 666 685 - -
Tpr5g0909 735 ProSiteProfiles Zinc finger SWIM-type profile. 503 538 IPR007527 GO:0008270
Tpr5g0909 735 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 613 IPR031052 GO:0006355
Tpr5g0909 735 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 24 613 - -
Tpr5g0909 735 MobiDBLite consensus disorder prediction 711 735 - -
Tpr5g0909 735 Pfam MULE transposase domain 291 329 IPR018289 -
Tpr5g0909 735 Pfam FAR1 DNA-binding domain 34 130 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0909 Tpr-Chr5 17362167 17365149 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g0909 FAR1 5.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0909 - - var:108339217 812.372