Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0877 ATGGCGCCATTTCAAATGGTGCTACCCAGTTGGTCTTCTGTCAGAGGTTTAACACTGTCTCAAATCGGTGTTATTCTTCGCGACTCCCATGGAATTGCTCAAGTCAAGAATTTAACCGGAAACAAGATTTTGCGGATATTGAAGACTCATGGACTTGCTCCTGAAATTCCTGAAGATTTGTATCATTTGATTAAGAAGGCGGTATCGATTAGGAAGCATTTGGAGAGTAGGAAGCATTTGGAGAGGAATAGGAAGGATAAGGACTCTAAATTTAGGTTGATTTTGGTTGAGAGTAGGATTCATCGTCTTGCTGGTTATTATAAGAAGACAAAGAAGCTTCCACCAGTTTGGAAATATGAATCTACAACTGCTAGCACTCGTGTTGCTTAA 390 0.4026 MAPFQMVLPSWSSVRGLTLSQIGVILRDSHGIAQVKNLTGNKILRILKTHGLAPEIPEDLYHLIKKAVSIRKHLESRKHLERNRKDKDSKFRLILVESRIHRLAGYYKKTKKLPPVWKYESTTASTRVA* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0877 129 CDD Ribosomal_S15p_S13e 42 121 IPR000589 GO:0003735|GO:0005840|GO:0006412
Tpr5g0877 129 PANTHER 40S RIBOSOMAL PROTEIN S13 15 129 - -
Tpr5g0877 129 Gene3D - 13 54 - -
Tpr5g0877 129 SUPERFAMILY S15/NS1 RNA-binding domain 38 120 IPR009068 -
Tpr5g0877 129 SMART Ribosomal_S15_2 42 127 IPR000589 GO:0003735|GO:0005840|GO:0006412
Tpr5g0877 129 PANTHER RIBOSOMAL PROTEIN S15P/S13E 15 129 IPR023029 -
Tpr5g0877 129 Pfam Ribosomal protein S15 46 124 IPR000589 GO:0003735|GO:0005840|GO:0006412
Tpr5g0877 129 Gene3D - 55 76 - -
Tpr5g0877 129 Gene3D - 77 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0877 Tpr-Chr5 16637432 16637974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0877 3 129 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 73.050 6.32e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0877 K02953 - csv:101210321 198.364