Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0861 ATGAGGACAGACATATTGGATGAACCAGAAAACAATGACATTATCGTCCCGGTTGATGATAGACCATATGATCCGGTTAAGAATGTTAACAAAAAAAAGGAAATATGGAGGCTAGGTGTCATTGTCGATGACATGTGGATTGTAACAAAGGGAGAAACTAAAGTTAGCATTGAGTTATTGGTCAGGGATATCAAGGGAAACACTATTCAAGTTTCAATATTGGAAAATGATATTGACTTATGGAAAACAAAGTTGGCCGAAGGAAACACCTATTACATGCGTAATTTTCGCGTTCATGACAATGATCAGGGTTTTAAAATGACTACGCACAAATTTCGGTTAACATTTGTTGGAGCCACGAGAGTTGATGAAGCTCACATTCCTGGAATTCCAAAAACCCTTTTCAACTTTAAGGATTTTTCTGAGATTCAGTCAGACAAATTTGAACCAGATCTTTTAGTTGATGCAATTGGAGTCATCGAATCTAGTAAGAAGTCTGTTACTGCAACATCCACAAAAAAAGGGAATGTGGTGTTCACCCTGAAGGATTTAAGGGATAATGTTCTACATTTCACTCTTTGGGATGGTTTGTCTGTGGAATTTATTAACTTTTACAACCAACTAACTGATATGGGTCCTGCTGTGATGATTATCAAACATGCACGCGTGAAGGCACCACAAGGTAATAAATCCTCACAATTGTATGATTGCTGA 714 0.3739 MRTDILDEPENNDIIVPVDDRPYDPVKNVNKKKEIWRLGVIVDDMWIVTKGETKVSIELLVRDIKGNTIQVSILENDIDLWKTKLAEGNTYYMRNFRVHDNDQGFKMTTHKFRLTFVGATRVDEAHIPGIPKTLFNFKDFSEIQSDKFEPDLLVDAIGVIESSKKSVTATSTKKGNVVFTLKDLRDNVLHFTLWDGLSVEFINFYNQLTDMGPAVMIIKHARVKAPQGNKSSQLYDC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0861 237 Pfam Domain of unknown function DUF223 58 149 IPR003871 -
Tpr5g0861 237 SUPERFAMILY Nucleic acid-binding proteins 22 123 IPR012340 -
Tpr5g0861 237 SUPERFAMILY Nucleic acid-binding proteins 135 231 IPR012340 -
Tpr5g0861 237 CDD RPA1_DBD_A_like 37 122 - -
Tpr5g0861 237 Gene3D - 21 124 IPR012340 -
Tpr5g0861 237 Gene3D - 129 237 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0861 Tpr-Chr5 16057890 16059558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0861 50 235 Core DNA Replication Machinery Family AT4G19130 25.616 1.71e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0861 - K19525 mtr:MTR_5g053590 145.976