Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0811 ATGGTTGATGTTCTAAGCCCTTTCACAATCCCATCTCCTCCACCACCACCATCTTCTTTATCAAACAAAAACAATAGCATACCTATGTTATACTATGGTCTAGTAGTGATGGGAATTGCAGCTATAGTCCTAGCAATTTACAACATCATCATAATAAAACGTTGCAATAGAAACCACAATCAATTATCACAACCTACAAGAACAAATATTGAAGGAGGTGCAAATAGTAATAATAATATGAGGTTTGAAAACCAACAAAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGATAGCAAAAGAAGAAGAACAAAAGGGTTATTATGATTATGAATGTTCTGTTTGCTTAATGGTTTATGAAGAAGGTGAAGATGTTAGGAAATTACCTAAGTGTAAACATTGTTTTCATGCTCTTTGTATAGATATGTGGCTTTTTTCTCACTTTGATTGTCCAATTTGTAGAACACCTGTTGGGCCATTTTGTCATGATTTTCAAGAAGAAAATTCTAGGGATGGGTTGATTGAATCTGGTGGGAGCATCAATGTTTGA 555 0.3459 MVDVLSPFTIPSPPPPPSSLSNKNNSIPMLYYGLVVMGIAAIVLAIYNIIIIKRCNRNHNQLSQPTRTNIEGGANSNNNMRFENQQRNLLSSFKYKKEVIAKEEEQKGYYDYECSVCLMVYEEGEDVRKLPKCKHCFHALCIDMWLFSHFDCPICRTPVGPFCHDFQEENSRDGLIESGGSINV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0811 184 SUPERFAMILY RING/U-box 92 162 - -
Tpr5g0811 184 CDD RING-H2_EL5_like 113 156 - -
Tpr5g0811 184 Pfam Ring finger domain 113 156 IPR001841 -
Tpr5g0811 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 161 IPR013083 -
Tpr5g0811 184 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Tpr5g0811 184 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 169 - -
Tpr5g0811 184 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 169 IPR044675 -
Tpr5g0811 184 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0811 Tpr-Chr5 14421782 14422336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0811 34 159 C3H Transcription Factor Family AT5G17600 38.060 8.47e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0811 - - aprc:113852327 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0811 5 14421782 14422336 Tpr5g0811 5 14421782 14422336 ECH