Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0806 ATGGAAGTTGCTGCTAGTGGTGGTGGTGGACCTCAGTTTGACCCTCGTACTGTCGAGGCTGTTTTCCGTGACTTCAAGGGTCGTAGAGCTGGCTTGATCAAAGCTCTCACTTCTGATGTTGATGAATTTTATCAGCAGTGTGATCCTGAGAAGGAGAATCTTTGCCTGTATGGATATCCTGGCGAGTTATGGGAAGTTGCTTTACCTGCTGAAGAAGTTCCTCCCGAACTTCCAGAACCTGCATTGGGCATCAATTTTGCCAGGGATGGAATGCAGGAAAAGGACTGGCTATCTTTAGTCGCTGTTCACAGTGATACTTGGCTACTCTCAGTTGCTTTCTACTTTGGGGCAAGATTTGGTTTTGACAGAGCTGACAGGAAACGACTTTTCACTCTGATTAATGATTTGCCAACAATATTTGAGGTTGTAACTGGATCTGCTAAGAAACAGGCAAAGGAAAAGACATCAGGCTCGAGCCACAACAGCAACAAATCGAAGTCTGGATCAAAAGCGCGTGCATCTGAATCGGCAAAGCATTCAAAGCCGCCGGCAAAAGAAGAAGATGATGAAATTGATGAAGAAGATGAAGAAGATCAAGGGGAGTGTGCTGCATGTGGTGAGAGCTATGCAAAAGCACCTGATGAGTTCTGGATCTGTTGCGACATATGCGAGAAATGGTATCATGGAAAATGTGTCAAAATCACTCCTGCCCGAGCGGAGCACATCAAGCAGTACAAGTGTCCTGCATGCAACAATAAGAGGGTTCGGCCTTGA 774 0.4599 MEVAASGGGGPQFDPRTVEAVFRDFKGRRAGLIKALTSDVDEFYQQCDPEKENLCLYGYPGELWEVALPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFTLINDLPTIFEVVTGSAKKQAKEKTSGSSHNSNKSKSGSKARASESAKHSKPPAKEEDDEIDEEDEEDQGECAACGESYAKAPDEFWICCDICEKWYHGKCVKITPARAEHIKQYKCPACNNKRVRP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0806 257 CDD PHD_AL_plant 202 253 IPR044104 -
Tpr5g0806 257 MobiDBLite consensus disorder prediction 150 197 - -
Tpr5g0806 257 PANTHER CPG BINDING PROTEIN 11 257 IPR045104 GO:0006355|GO:0042393
Tpr5g0806 257 MobiDBLite consensus disorder prediction 150 170 - -
Tpr5g0806 257 SUPERFAMILY FYVE/PHD zinc finger 193 254 IPR011011 -
Tpr5g0806 257 Pfam Alfin 17 145 IPR021998 GO:0006355|GO:0042393
Tpr5g0806 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 256 IPR013083 -
Tpr5g0806 257 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 11 257 - -
Tpr5g0806 257 ProSitePatterns Zinc finger PHD-type signature. 202 250 IPR019786 -
Tpr5g0806 257 SMART PHD_3 201 251 IPR001965 -
Tpr5g0806 257 ProSiteProfiles Zinc finger PHD-type profile. 199 253 IPR019787 -
Tpr5g0806 257 MobiDBLite consensus disorder prediction 171 186 - -
Tpr5g0806 257 Pfam PHD-finger 202 252 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0806 Tpr-Chr5 14269953 14273876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0806 8 256 Alfin-like Transcription Factor Family AT3G42790 68.924 6.15e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tpr5g0806 Alfin 3.4e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0806 - - rcu:8272513 387.882