Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0756 ATGTACCATATGGAAGGTGTATTTTCTCTTCCTATAGCCGTCAGAACTGAATTTATTCATACTCTAATGCAATCACTTGGAGGATGTTGTTACATTTGTCTTTGGGCATATAATACCATATTACCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGCTAAACAATCAAATTCCAAGTTCTTCTTTGGGAAGTGTAGCACAACAGCTTTTTAATCAATACAGAATTTTATCATTTGATGTCAATGATGATTGTGTTCCTGGACTAGCTTTTAGGAATCAACAACCGTACCTCGAGCTGCAACAATTGGAACTTTTTGCACTGTCTACAACAGAAATACAGACACAATTCTATCAGGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGTTGATATTCAAACAGCACTTAGTAGTTTATTTCCTGAAGATTTTTCAAGACAAACACAACAAATTATTGATCAAAATACTAATCCACCTTCATCATCTTCATCTTCAATGAGATCACTATCAGCAGCAGGTAGTCCTGAATATTCATCTCTCATATTCAACAATATTCCAACTGGAAGAACTTCTCCATCTCAATTTCCACCTGATCATACACATCTTGGAGGATCAATAATCCCTCCAATGAGACCTATTTCAAACACACTACCCCTTCAACTTCAACATCAACAATTTCCTCAAATCACACCAACACAATTGTTCTCTACAACACAAATGAATCATCAAAATGATGCAATAATGAGAGCAATACAAAATGTTATATCTACACCCCCCTCTCAACGAAACTTGCATGGAGTTCATCAAGAAGCTAGTGCATTTGGAAGGTATAGAAATGATAAAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTTCATTCTTTAGAAACTTGAATTTGATGAGATTGAGAGATCGGAGTACTCAAGCGATGCGTCCTTCGAGTAATCAACTTCATCATATGATATCTGAGAGACGGAGGCGCGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCAATACTAATAACAGCAAAGGAGACATTAAGGTCATTGATGGCTGAAATAGACAAACTTAGCAAAAGAAATCATGAGTTGATGTCACAACAATTGCCAGCAGCCAATAAAGAATCAACAAAAACAAAAGAAATTATCAAATTATCATCAAATGAAAGATTAAACGTGCAAATTTTGCATGTACCAGAATCAAGTTCATTAGAAGACGAGCCAATGATAGTGGATTTGCAAGTGAATGTGATGGGACAAATTTCTCAAGTTGATATGTTGATTAGATTATTGGAATTCTTAAATCAAGTTCAACATGTTAACTTGCTTTCAATGGATGCAACAAATACAAATAATGCACAAGGGGATAATTCCATTCATCAAATTACATTCAGGCTAAGGATTACTCAGGAATGTGAATGGGACGAGGAAGCCTTCCAGGAAGCTGTGAGAAGAGTTGTTGCTGACTTGATGCATTCCCAAGTGGACTAA 1605 0.357 MYHMEGVFSLPIAVRTEFIHTLMQSLGGCCYICLWAYNTILPNRLSFLDGFYNVLNNQIPSSSLGSVAQQLFNQYRILSFDVNDDCVPGLAFRNQQPYLELQQLELFALSTTEIQTQFYQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTALSSLFPEDFSRQTQQIIDQNTNPPSSSSSSMRSLSAAGSPEYSSLIFNNIPTGRTSPSQFPPDHTHLGGSIIPPMRPISNTLPLQLQHQQFPQITPTQLFSTTQMNHQNDAIMRAIQNVISTPPSQRNLHGVHQEASAFGRYRNDKSPNIGSNFRRQSLMKRSFSFFRNLNLMRLRDRSTQAMRPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNHELMSQQLPAANKESTKTKEIIKLSSNERLNVQILHVPESSSLEDEPMIVDLQVNVMGQISQVDMLIRLLEFLNQVQHVNLLSMDATNTNNAQGDNSIHQITFRLRITQECEWDEEAFQEAVRRVVADLMHSQVD* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0756 534 Coils Coil 345 365 - -
Tpr5g0756 534 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 528 - -
Tpr5g0756 534 Gene3D - 338 412 IPR036638 GO:0046983
Tpr5g0756 534 Coils Coil 378 405 - -
Tpr5g0756 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Tpr5g0756 534 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 528 IPR044658 -
Tpr5g0756 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 407 IPR036638 GO:0046983
Tpr5g0756 534 SMART finulus 345 394 IPR011598 GO:0046983
Tpr5g0756 534 Pfam Helix-loop-helix DNA-binding domain 343 388 IPR011598 GO:0046983
Tpr5g0756 534 CDD bHLH_AtbHLH_like 344 396 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0756 Tpr-Chr5 13030164 13036289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0756 14 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.659 4.80e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g0756 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0756 - - gmx:100807098 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0756 5 13030164 13036289 Tpr5g0756 5 13030164 13036289 ECH