Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0741 ATGTCAGGCGGAAAGAAAACCCGAGGTCGTCAAAAGATTGAAATCAAAAAGATAAGCAATGAAAGAAGCATGCAAGTTGCCTTCTCAAAGCGCCGTAATGGGCTCTTCCAGAAAGCTTATGAGCTTTTCACTCTCTGTGGGGCATATGTTGCTCTAATTATATTTTCACCTAGTGGGAAGGTTTTTTCCTTTGGTAACCCCGATCTTTATACGGTCATAGATCGTTATTTCTCACGGGTCCCACCTGTAAACAACAACATTAGGCAATTCATTGAGGGTTTTCCTAGCACCAACGTGCGCGACCTCAATGCTCAGTTGACTCAGGCCAATGATGCACTAGATCGCGAAAAAAAGCGTGGCGATGATCTAAGTCATATTTGCAAGATGATTGAGGATCCATCTTGGTGGGCTTCACCCATTGACGAGATGAACAAGGATCAACTTGAATTGTTGAAGAAGGCTTTGGAGGAGCTGAATAAAAATGTTGCTGAACCAGCTGATAGGCTTGAAATCCTGGGTGCTCCTGCCCAAACTCAACAGGCTCAAATGTCTCCACCACATGTTTTTCAGAATCCTATGGGAGGAGGAGGAGGAGAAAATGGACCCTCCTGA 612 0.4461 MSGGKKTRGRQKIEIKKISNERSMQVAFSKRRNGLFQKAYELFTLCGAYVALIIFSPSGKVFSFGNPDLYTVIDRYFSRVPPVNNNIRQFIEGFPSTNVRDLNAQLTQANDALDREKKRGDDLSHICKMIEDPSWWASPIDEMNKDQLELLKKALEELNKNVAEPADRLEILGAPAQTQQAQMSPPHVFQNPMGGGGGENGPS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0741 203 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr5g0741 203 PANTHER MADS BOX PROTEIN 7 171 - -
Tpr5g0741 203 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Tpr5g0741 203 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr5g0741 203 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Tpr5g0741 203 Coils Coil 99 119 - -
Tpr5g0741 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr5g0741 203 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 171 - -
Tpr5g0741 203 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Tpr5g0741 203 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr5g0741 203 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr5g0741 203 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr5g0741 203 Gene3D - 89 183 - -
Tpr5g0741 203 MobiDBLite consensus disorder prediction 177 203 - -
Tpr5g0741 203 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0741 Tpr-Chr5 12694519 12695130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0741 5 169 Type I MADS-box Gene Family AT5G60440 47.619 1.55e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr5g0741 SRF-TF 8.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0741 - - mtr:MTR_1g106070 215.312