Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0725 ATGAGTGATTATCACAAATCTTTCACGTTGGATCTTAATCTTGGACTTGGATTAGGATCTTATGTGCAAAATAATGTGAACAATTCATTGGCTAGTTCAAAAGATGAATTAACCATTGGTTTGAATCATGATGATAAGGCAAATGAATTGAGTTTGAAGAGAGTGCATGAAGAACAAGAACACACAATTGAAGAAGAGATTGCTATTGACACCACCAATGATAGTAACGGGTGTACAAAGAAATTGAGGCTTACTAAGGAGCAATCAACCATGCTTGAGGATGCTTTCAAGCTTCATAACACCATTAACACCGCTCAAAAACGGGCACTTGCTGAGAAATTAAATTTAAAGCAAAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAACAAACAGAGGTAAACTACATGTTCTTGAAGAAATGTCATGATAAACTAAGTGAGGAAAATCTTATCTTAAAGAAAGAATTAGAAGAGTTGCGTGCATTAAAAGTTGGACCATCAAATATTAATCAATCAACCAAAGCTGCAAATTGGACCATTTGTTCATCATGCAAGAAAATATGGAAGCAAAATGAAGGACACAACAATGAAGATGATGAAGAAAATATGGTTAGAAAGAGTAGCTATAGCACCATAGAGATAGAATAG 666 0.3514 MSDYHKSFTLDLNLGLGLGSYVQNNVNNSLASSKDELTIGLNHDDKANELSLKRVHEEQEHTIEEEIAIDTTNDSNGCTKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARTKLKQTEVNYMFLKKCHDKLSEENLILKKELEELRALKVGPSNINQSTKAANWTICSSCKKIWKQNEGHNNEDDEENMVRKSSYSTIEIE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0725 221 CDD homeodomain 80 136 IPR001356 GO:0003677
Tpr5g0725 221 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Tpr5g0725 221 MobiDBLite consensus disorder prediction 198 212 - -
Tpr5g0725 221 SMART HOX_1 77 139 IPR001356 GO:0003677
Tpr5g0725 221 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 38 214 - -
Tpr5g0725 221 SMART halz 135 178 IPR003106 GO:0006355|GO:0043565
Tpr5g0725 221 MobiDBLite consensus disorder prediction 198 221 - -
Tpr5g0725 221 Coils Coil 148 168 - -
Tpr5g0725 221 SUPERFAMILY Homeodomain-like 72 136 IPR009057 -
Tpr5g0725 221 Pfam Homeodomain 81 133 IPR001356 GO:0003677
Tpr5g0725 221 Gene3D - 85 132 - -
Tpr5g0725 221 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Tpr5g0725 221 PANTHER - 38 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0725 Tpr-Chr5 12155792 12158041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0725 9 203 Homeobox Transcription Factor Family AT4G17460 43.434 9.63e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tpr5g0725 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0725 K09338 - gmx:100790522 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3399 2 37500942 37503022 Tpr5g0725 5 12155792 12158041 PCT