Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0712 ATGGAGAATATTGGTGATGAGTACAAGCATTACTGGGAAACCAACATGTTCCTCCAAACTCAAGAACTTGACAGCTGGGGATTGGATGAAGCTTTTTCAGGATACTATGATTCAAGCTCTCCTGATGGTGCAGCTTCATCAGCAGCTTCATCTAAGAACATTGTTTCTGAAAGGAATAGAAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTACATACAACACTTACATGAGCAAGAGAAGATTATTCAAGCTGAGATAATGGAACTTGAATTAGGGATGCCAAATAATATTAATCCAAATTATGATTATGATCAGGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTATATGATTCTGTCAATTCAAGAAACTCTCCTATCGAAGTCCTTGAGCTTAGGGTGACATACATGGGAGAGAATACAATTGTAGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAATTGTGTGAAGTGTTTGAATCTTTGAAGCTTAAGATTATTACAGCCAATATCACTTCCTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGACGAGAAAGATCTATTGCAGATAAAGATCCGAACAGCCATTGCAACTCTCAATGATCCTTTAAGTCCTATGAGCATCTAA 735 0.3823 MENIGDEYKHYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSAASSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELELGMPNNINPNYDYDQELPVLLRSKKKRTDQLYDSVNSRNSPIEVLELRVTYMGENTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEDEKDLLQIKIRTAIATLNDPLSPMSI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0712 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 238 - -
Tpr5g0712 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 114 IPR036638 GO:0046983
Tpr5g0712 244 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Tpr5g0712 244 Gene3D - 44 113 IPR036638 GO:0046983
Tpr5g0712 244 SMART finulus 54 103 IPR011598 GO:0046983
Tpr5g0712 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Tpr5g0712 244 PANTHER TRANSCRIPTION FACTOR BHLH35 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0712 Tpr-Chr5 11945587 11955292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0712 1 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.138 4.09e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g0712 HLH 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0712 - - gmx:100817978 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0712 5 11945587 11955292 Tpr5g0712 5 11945587 11955292 ECH