Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0711 ATGACGGAGCGAATTAAGTTCAGCGTATTATGCAGCTTATTAACATGGTCACAACGAACCAAATCGCCGGCGAAGAAACGCGCAAAGTTCCGGAAGTTTCTCGATTCTTTCTGCACCGATCGTAACTACTTTCCTGCAATTCGACTCATTCTTCCTAATCTCGATCGTGAACGTGGTTCCTATGGTCTCAAAGAATCCGTTCTCGCTACTTCACTTATCGATGCTATTGGTTTGTCCAAAGACTCGCACGACGCTCTTCGCCTTATCAATTGGCGGAAAGGTGGTTCTAAAACCGGTGCTAATGCCGGTAATTTCGCCCTTGTCGCCGCCGAGGTGCTGCAGCTTAGGCAAGGTACTGCTTCCGGTGGATTGACGATAAAGGAGTTGAATGACTTGCTTGATCAACTGTCTTCGAGTGAAAATAGGGCTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAATGCACAGGAAATGAAATGGATTATCATGATAATCCTGAAAGATTTGAAGCTGGGATTTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAACCAACGTCATAAGAGGCAGGATATTGAAATTGGAAAAGCTGTGCGTCCTCAATTAGCTAAGAGAGTTGCTAACGCAGCTCAAGCATGGAAGAAGCTTCATGGCAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGGCATGTCGGAAATCATAATTCAAAACATTCTTGTGGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAATCGTTTTGCTGAGTTTGGCTCTAATCAGGAAATAGCCAAGGCAGCAAGGGATGGGCTTGAGAGTAATAGACAGTTATGCTACGTTGCATTTGACATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAGCGGCATGAGATTCTACGTAAAGTTGTGAAGCCATTGAAAGGTCGTTTCGAAATTTTAATACCTAATGGTGGTATCAACAGTCATCCATCTTCTGGTGAACCATGTTGGTCATTTATTGCTCATAATGCAGATGAAGTTGAAAGGTTTTTCAAAGAAACCATTGAAAATAGAGACGAGGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGACCGCAGTGGAAAATGGCTAAAACTGAAGCCTGACTACGTTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACGTGGTGGAGAGGTTGCTCAGTTCTTGGTGGGTCTTGCAGAGCGTCCATCCCCAAATACACATCCCAAACGATTTATCTCCTTTTGTAGAGTTGGTACCGGACTTTCTGATGATGAGCTTGAAGCAGTAATAACCAAACTAAAACCTTACTTCAGAAAGTATCCAAAGAAGATGCAACCAAGCTTTTATCAAGTTACTCATCATTCCAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGAAATCCGAACTATTGAATCTGAGGTATTCGCTGCACCTTACTCTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGATAAGGCTTGGCATGAATGTCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAACGGTACCACACAGAGGGATCCAGAATATGGGACCAATGACAGTAAACCAAAACGCATGAAATCCTCTGTAAGGGGAGAAAAGAAAAACGTGTCCATTGTTCCTTCTCATTTAAGTCAAACTGATGTTTCCGGTGTTAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTCCCTCCATCTCATTCTCTCGAGTCGTTCCATAAATTAGTTGCAGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAACAAAGGGTTTAAATTTGAAGCTGCAAAACGTCGTGGTGATGTCATTCATTATACTTGGGTATTGGATTGCTATGCACAAAAGAAGCTCATCCCCTTACAGTCGAAGTACTTCCTCTTCGTATCTGAACTGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCGGACTCTTACTACTTGGATCTTGATCTTCGAGACATAAAACAGCTCTTAAGCAATATTAATAGGTCAGAAGATGTCAGTACTGTCGACCATTACAGGAAAAAATACTGCCCAAAGGACAAGTGGTCTGTCTTCAATGGATGCTCCATTTATTTCCACACCACAATGCCATCATTGAAAGAAGATTGGCAAATTTTATTGGGACTTTCTTCAAAGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGGAAAGTCACCTCTAATCTTAAATCTGCAACTCATGTGGTGGCCTTGTTTGTACCAAGTTTTCATACCAACTATGATGACGAAATACATAGTAGTAGTTTTACTTCAGTTGAGAGAAAGCTTCTCGGTAGCAAGAAGTTGCATATAGTTAATTCCAAGTGGTTAGAAGATTGTTTGAATAGTTGCCAAAGATTATCAGAAGACACTTATAGCTTGAAGCCTTATGGAATAGAAGAATCAACTGCTGAGGATAGTGAACATGATGTGGCGGCAGATGTTCATCTGGTTGAAGATAATGTAAGAGACCGAAATGAATCTTTCTCCAACAAGGGAAGTAAGCAGAGTAGTGCCAAAGCTGCTTCTCAAGACAGTTTGGCTTTAGCATCACAAGAGAAGCGTGGCCCAAGGAAACGAGGAAGACCTGCGGGCACAGGTATTAAAAAAATAAAAACAGACAGAAACCAGGCTCGAAGAGCACGATCGCAAATTGCGAAAAAACGTGCTAAAATAAGTGAATATGAATCAGATGAAAGTGATTCTCTTGATATAAGACCATATGAGAAAGAGGCTGACATTACAGAAGGAAGTCTTGATTTTCACAATGAACATTCGAAACCACATGAGACTGAGAAAACTCATAATGTCCAAGGTACTGAAGTGGTAGAAAGTTCTGAACGAAACAAGGGATTCGAGCTAGAGGATTTCAAGGACAACCAATATGAAAAGATGTTTGTTCCCGAAATTGAAATGAATGACGTGCGCAATGACCATAGTAGTCAGGGGACTGAGAAACTTGAAATTATGACTGATCCTGTGCAGGCAATGTTACTTGACATGATTCCTAGCCTTGCCATGAACAAAGTTGAGCAACCTACGAATCGTAATATTGAGGAAGAGAAACGCCAGGTTCAGGAAGAGAAATGTCATGTTGAGGAAGAGAAGCCACCAGAAATCTCCAACGAACAGCCTCCGACTACAAAGAAAAAGAAAGTTAGCTTAAAGGCCATCGCCGGTGGTCTGCTCAATGATTGGTAG 3543 0.4093 MTERIKFSVLCSLLTWSQRTKSPAKKRAKFRKFLDSFCTDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDAIGLSKDSHDALRLINWRKGGSKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGFSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEIGKAVRPQLAKRVANAAQAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVKPLKGRFEILIPNGGINSHPSSGEPCWSFIAHNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPDYVQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELEAVITKLKPYFRKYPKKMQPSFYQVTHHSKERPDVWVDSPEKSIILSITSEIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDPEYGTNDSKPKRMKSSVRGEKKNVSIVPSHLSQTDVSGVKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADNKGFKFEAAKRRGDVIHYTWVLDCYAQKKLIPLQSKYFLFVSELTKKKLQEEIDEFSDSYYLDLDLRDIKQLLSNINRSEDVSTVDHYRKKYCPKDKWSVFNGCSIYFHTTMPSLKEDWQILLGLSSKRFKLEVLMGGGKVTSNLKSATHVVALFVPSFHTNYDDEIHSSSFTSVERKLLGSKKLHIVNSKWLEDCLNSCQRLSEDTYSLKPYGIEESTAEDSEHDVAADVHLVEDNVRDRNESFSNKGSKQSSAKAASQDSLALASQEKRGPRKRGRPAGTGIKKIKTDRNQARRARSQIAKKRAKISEYESDESDSLDIRPYEKEADITEGSLDFHNEHSKPHETEKTHNVQGTEVVESSERNKGFELEDFKDNQYEKMFVPEIEMNDVRNDHSSQGTEKLEIMTDPVQAMLLDMIPSLAMNKVEQPTNRNIEEEKRQVQEEKCHVEEEKPPEISNEQPPTTKKKKVSLKAIAGGLLNDW* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0711 1180 SUPERFAMILY BRCT domain 652 737 IPR036420 -
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 939 1018 - -
Tpr5g0711 1180 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Tpr5g0711 1180 ProSiteProfiles BRCT domain profile. 794 908 IPR001357 -
Tpr5g0711 1180 CDD BRCT_DNA_ligase_IV_rpt1 652 738 - -
Tpr5g0711 1180 Pfam BRCT domain, a BRCA1 C-terminus domain 651 733 IPR001357 -
Tpr5g0711 1180 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Tpr5g0711 1180 ProSiteProfiles BRCT domain profile. 648 736 IPR001357 -
Tpr5g0711 1180 Gene3D BRCT domain 663 777 IPR036420 -
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 981 1018 - -
Tpr5g0711 1180 SUPERFAMILY Nucleic acid-binding proteins 449 598 IPR012340 -
Tpr5g0711 1180 Coils Coil 992 1012 - -
Tpr5g0711 1180 SMART BRCT_7 796 898 IPR001357 -
Tpr5g0711 1180 SMART BRCT_7 650 726 IPR001357 -
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 611 626 - -
Tpr5g0711 1180 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr5g0711 1180 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr5g0711 1180 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr5g0711 1180 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 945 964 - -
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 1128 1164 - -
Tpr5g0711 1180 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 597 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tpr5g0711 1180 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr5g0711 1180 Gene3D - 444 603 IPR012340 -
Tpr5g0711 1180 Coils Coil 126 146 - -
Tpr5g0711 1180 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 1039 1063 - -
Tpr5g0711 1180 CDD OBF_DNA_ligase_IV 448 590 - -
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 1126 1167 - -
Tpr5g0711 1180 SUPERFAMILY BRCT domain 788 910 IPR036420 -
Tpr5g0711 1180 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr5g0711 1180 MobiDBLite consensus disorder prediction 601 626 - -
Tpr5g0711 1180 Pfam ATP dependent DNA ligase C terminal region 465 582 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tpr5g0711 1180 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Tpr5g0711 1180 Gene3D BRCT domain 794 908 IPR036420 -
Tpr5g0711 1180 PANTHER DNA LIGASE 4 2 909 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0711 214 599 Core DNA Replication Machinery Family AT1G08130 28.607 9.10e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0711 K10777 - gmx:100816002 1813.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0711 5 11901281 11932943 Tpr5g0711 5 11901281 11932943 ECH