Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0687 ATGGTAGAGTACAGGGAAGGGGACTATACAAATCCTACGCTTCCTGTCAATCATAGTGCTATTGAGGGGGCAGCACAGCCTGTTATTGGTCCCGATGGAAAGAGGAGAGAACCGGAGAGCAATGTACTTTTGGCTGCCATTGGAAATATGAAGTATGCTGTTACTGTTGACGTCATCAACACGGTTTTTTCTGCATTTGGTACTGTCCTGAAAATTGCCATGTTCGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCAGATGTTACGACGGCAGCAGCTGCTAGAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTACCACAAGTTCCTGTAACAGCTTGGCAAAATCCTCAGGCTGCACCTATGTACCCAACCAGTTCCCCTGGTTTTCAGACTCAAGTTCCTGGAGGACAAGGGCCATCATGGGATCTAACTCAGCATGCAGTTAGACCGGGTTAA 552 0.4529 MVEYREGDYTNPTLPVNHSAIEGAAQPVIGPDGKRREPESNVLLAAIGNMKYAVTVDVINTVFSAFGTVLKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPQVPVTAWQNPQAAPMYPTSSPGFQTQVPGGQGPSWDLTQHAVRPG* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0687 183 CDD RRM3_PTBPH1_PTBPH2 40 136 IPR034794 -
Tpr5g0687 183 PANTHER OS02G0789700 PROTEIN 4 162 - -
Tpr5g0687 183 Gene3D - 39 144 IPR012677 -
Tpr5g0687 183 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 4 162 - -
Tpr5g0687 183 SUPERFAMILY RNA-binding domain, RBD 45 141 IPR035979 GO:0003676
Tpr5g0687 183 Pfam RRM-like domain 40 118 IPR021790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0687 Tpr-Chr5 11370461 11376124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0687 10 106 Eukaryotic Initiation Factors Gene Family AT3G16380 25.490 4.83e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0687 K14948 - gmx:100792308 297.745