Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0686 ATGCAATTTCGATCCTCATTCAAGTGGGAGTTGGTCGTTACTTCCTCAATCTCTAGGGGTAGAAATGTCTTGAATTTTCCCAGGGAATACACCAGAAATTGTTTAATGAACTCTGACAGGAAGATCTATCTTATTGATGTTGCATCTGGAAGAGTTTACAATTCAAAGATTTTCACTTCAGGTCAAAATAAAGAAAACAGATATGTTTACTCTTGTTGGAAGAAATTTGTGACTGAGAACAACTTGAAGTTCAGAGATAACGTTATCTTCAATGCCACCACTGGTGATAATGTTATCGAAGTCCAGATCCTGCGTCGTCGCCGTCGTTCACGTTAG 336 0.3869 MQFRSSFKWELVVTSSISRGRNVLNFPREYTRNCLMNSDRKIYLIDVASGRVYNSKIFTSGQNKENRYVYSCWKKFVTENNLKFRDNVIFNATTGDNVIEVQILRRRRRSR* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0686 111 SMART B3_2 7 107 IPR003340 GO:0003677
Tpr5g0686 111 Pfam B3 DNA binding domain 13 106 IPR003340 GO:0003677
Tpr5g0686 111 ProSiteProfiles B3 DNA-binding domain profile. 9 107 IPR003340 GO:0003677
Tpr5g0686 111 SUPERFAMILY DNA-binding pseudobarrel domain 9 108 IPR015300 -
Tpr5g0686 111 Gene3D - 3 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0686 Tpr-Chr5 11362123 11362727 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g0686 B3 5.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0686 - K23034 mtr:MTR_6g087720 49.6766