Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0589 ATGGCTGAAATTCACTCTCAAACTCCAACAATTAGTCCCACAATAAGCAAACCATGTAACAATCCTCCAACACAACATGGTCTCAATTCTATGGTTCTTGTAGCAGCTATAGTTTGTGCTTTACTTTGTGCTCTTGGTCTCAACACAATGTTACAATGTGTGTTCCAATGCGCGAACCGTGTCCTTACCGAACCTCTACAATGGATCACTTCTCGAAGGCGCAATTCCGGACTCAAGAAGAAAGAAATGGTTGCTTTGCCAACATCAATTTATAATACTCATTCAGCTGGATCAACTCCTCCATGTTTGGATTCTAGTTGTGCCATTTGCTTAGCTGAATTTTGTGATGGTGATAACATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTTGTTTGTATTGATAAGTGGTTACTTTCTCATTCTTCTTGTCCTACTTGTAGAAAAATGATCAAGTCCAATGATTCTGTACATTGCTTAAGCATTGTCATATCATAG 501 0.3852 MAEIHSQTPTISPTISKPCNNPPTQHGLNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWITSRRRNSGLKKKEMVALPTSIYNTHSAGSTPPCLDSSCAICLAEFCDGDNMKLLPKCNHRFHVVCIDKWLLSHSSCPTCRKMIKSNDSVHCLSIVIS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0589 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 160 - -
Tpr5g0589 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 155 IPR013083 -
Tpr5g0589 166 SUPERFAMILY RING/U-box 106 155 - -
Tpr5g0589 166 SMART ring_2 107 148 IPR001841 -
Tpr5g0589 166 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Tpr5g0589 166 Pfam Ring finger domain 106 149 IPR001841 -
Tpr5g0589 166 PANTHER OS06G0666500 PROTEIN 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0589 Tpr-Chr5 9122525 9123154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0589 11 150 C3H Transcription Factor Family AT3G10910 38.217 1.35e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0589 - - gmx:100803003 234.958