Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0587 ATGGCTTTTGAGGGGAACAACGCTGCAAAAAAAGAAAACACACGAAAGAGAAGGATTGATGAAATCAAGAAAGCTGACTTTTCAAAACGCAAACTCGGGCTCTTCAACAAAGTAACAGAGCTCTCTATCTTATGCAAAGCAAAAACTGCACTCATCGTCAGATCGTCCAACAACGATCTGGATGCATGTGGCTATCCCAATTGTGACGCTGTTGTTCAACAGTTTCTAACCGGAAAGGTCATCACGGAGGACTATGACAAAAAGAAGAAAGAGGAGGTTGTGGAAATCCAAAGGCTTGAATATGAGACAATTGTAGATAAACTTATGGAACTCAAGGAAGAGGAGAAAAATTTGGAAGCTATCAATGATGAGGCAGAGAAGAGTGGTTATGGTATTCCTGATTGGTGGAATGGTTCTATTGATGATATGAGTTTAGAATCTCTTGAGGAATTTAAAAGTTCTTTGCAAAAATTGAAGCTTAATTTGAGACTTAATTTAGATGCAAAGAAGTTAATGTAG 519 0.3815 MAFEGNNAAKKENTRKRRIDEIKKADFSKRKLGLFNKVTELSILCKAKTALIVRSSNNDLDACGYPNCDAVVQQFLTGKVITEDYDKKKKEEVVEIQRLEYETIVDKLMELKEEEKNLEAINDEAEKSGYGIPDWWNGSIDDMSLESLEEFKSSLQKLKLNLRLNLDAKKLM* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0587 172 Gene3D - 20 102 IPR036879 GO:0003677|GO:0046983
Tpr5g0587 172 SMART madsneu2 14 66 IPR002100 GO:0003677|GO:0046983
Tpr5g0587 172 ProSiteProfiles MADS-box domain profile. 23 67 IPR002100 GO:0003677|GO:0046983
Tpr5g0587 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 60 IPR002100 GO:0003677|GO:0046983
Tpr5g0587 172 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 15 170 - -
Tpr5g0587 172 PANTHER MADS BOX PROTEIN 15 170 - -
Tpr5g0587 172 Coils Coil 94 128 - -
Tpr5g0587 172 SUPERFAMILY SRF-like 11 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0587 Tpr-Chr5 9105943 9106461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0587 24 159 Type I MADS-box Gene Family AT5G60440 26.761 8.65e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr5g0587 SRF-TF 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0587 - - cam:101507050 136.346