Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0575 ATGCTGCTGGATAACGTTGTCTGTCTATTCCACTCTTCTTCACTCTCTTTCTGTCACTTAACAATGGCTTCTTCTTTTCCACTTCACCAATCAACACCACCATGCTTCTTCTCAAAAACCCCAACATTTTTTACTAATACTACTTTAATTCCTATACAGTTTAAAGGCTATTTGTGGCGACCCAGTTACTCTTTTGGCTCTTGTGTTGAGCACAAAGTACAGCCTGTTAAAGCAGTTTCTGTTGAAGCTGCTCAATTTCCCTTGCTTCAGCCTCCTAAGCCGGATGATTCAGCTCCTGAGTTGGAGCCTGTGGATCCTGATTTCTACAGGATAGGATATGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGGAAGGACCAAATGGTTTTGGTGTGTATGCTTCTAAAGATGTCGAAGCTCTTCGTCGACCAAGGGTTATAATGGAAATTCCTCTTGAGTTGATGCTTACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCCTTGGTCATCCAATATTTGATATTATCAACTCAACAGATCCAGAGACAGATTGGGATTTAAGATTAGCATGCCTTCTCTTGTTCTCGTTTGACTGCAAAGACAACTTTTGGCAGTATTACGGCGATTTCTTACCAAGTGAAGATGAATGTACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTAAAGTGAGATTTCAGCAACAGCGAGCCTTAGAATTCTGGAAGAAGAATTGGCATAGTGATGTGCCCCTAAAAATAAAACGTCTTGCTCATGAACCACAAAGGTTTATTTGGGCAGTAGGAATTGCACAGTCACGATGTATCAATATGCAAATGAGAATGTGTGCGCTAACTCAAGAGGCAAATATGCTGATTCCTTATGCCGATATGTTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCAGGACAACGGATTAAAAAGGGAGATGAGATGACAATTGATTACATGAGTGCACAGAAGAATGACATGTTAATGCTAAGATATGGATTTTCATCGCGAGTGAATCCTTGGGATGATTTGAAATTCTCAGGCAATGCACGAATCCATTTGGATTCCTTCTTGTCAGTTTTCAACATATCTGGCCTACCTGACGAGTATTATCGTAACGAAGTTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCACGAACATTGCCAACTTGGTCAGACAGAGATATTCCTCCAATCCCAAGTCAAGAAAGGAAGGCTGTGAAGGCATTACAACAAGAGTGCAAAAAATTGCTCGCGGGATATGCTACCACCTCTAAGCAAGACCAGAAATTACTAGATGCATCGCCAGAAGCTAGAAGAACTCTTGAAGCTGCAATAAAGTACAGATTGCACCGAAAATTGTTGATAGAGAAAAGCATCCTAGCATTGGATATCTATCAAGAACAAATACTGTTTTGA 1542 0.4099 MLLDNVVCLFHSSSLSFCHLTMASSFPLHQSTPPCFFSKTPTFFTNTTLIPIQFKGYLWRPSYSFGSCVEHKVQPVKAVSVEAAQFPLLQPPKPDDSAPELEPVDPDFYRIGYVRSMRAYGVDFKEGPNGFGVYASKDVEALRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTDPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSEDECTSLLLATEEELLELQDPDLASKVRFQQQRALEFWKKNWHSDVPLKIKRLAHEPQRFIWAVGIAQSRCINMQMRMCALTQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIKKGDEMTIDYMSAQKNDMLMLRYGFSSRVNPWDDLKFSGNARIHLDSFLSVFNISGLPDEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSDRDIPPIPSQERKAVKALQQECKKLLAGYATTSKQDQKLLDASPEARRTLEAAIKYRLHRKLLIEKSILALDIYQEQILF* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0575 513 Pfam Rubisco LSMT substrate-binding 442 494 IPR015353 -
Tpr5g0575 513 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 365 501 IPR036464 -
Tpr5g0575 513 Gene3D set domain protein methyltransferase, domain 1 114 368 - -
Tpr5g0575 513 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 82 496 - -
Tpr5g0575 513 Gene3D - 390 510 IPR036464 -
Tpr5g0575 513 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 82 496 - -
Tpr5g0575 513 CDD SET_LSMT 121 368 - -
Tpr5g0575 513 Pfam SET domain 130 353 IPR001214 GO:0005515
Tpr5g0575 513 SUPERFAMILY SET domain 129 368 IPR046341 -
Tpr5g0575 513 ProSiteProfiles SET domain profile. 109 354 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr5g0575 SET 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0575 - - cam:101505820 815.068