Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0557 ATGGCAAGTTCTGGTGTTGAAATTGCTTCTTCTGCACCGTTTGGTTGTGTTTTAAGGGACCGTAATCATCGTGATGTATGCAGAGAAAGTAGCAAAGTTAAGGCTACACATGTTGCTTTTCAGAGAAACATTAAGAATTTTGTCATGGATCATTTTAACACGAGCTTTTCCATGGCTGATTCTTCAACAACAAATGAAAACAACATCAATAGCAGCAGAAACAACAGCAACAACAACAATAACAACAATGAAAGTCAAATGAATAACAACAATCTTGCAAAGATTCGTTTGACAAGAAACAATCACAACTATGATGTCAATAACAACAATAATAAGGGTGATAAAGATGAATCACCTTTGGCTTCATTGATTAGCGCGAAAAATTCGCGCCTTCTTGATCGATGGGCTGCGAAACAAGCTCGTGAGATGGTTTCAACATTGCAGAATGAAGCTGAGTTGTTGTCTATTGATAACAACATTCCTGTATCTTCGGAGACATCGAGTATTATCTCGGACGAATGCTCTTCGGACATATCGAACCTTGGTGCATCTTCCCTTGTTCAGCTATGGGAAAAGAGGCTTAACAATTCAAGTGGATCAAAACCAAGCACTCCAATGGAGAAAACAAGTCCAAATGATGGTACAACAAATGCTACTTGCAACAATGAGAATGTGTATGTTGTTGAAGAACAAAGAGGGTTGGAATTAGGAGAGTGTTTTGAAGGACAAGAATCATTTTCAATTTCTTCGTTCCCTGATTGGGAATCGGATAAGACAGGTGATCAAAGTAGGTCTTGTTCAAGAGATCAAAGTAGGTGGTGTTCAGCGGAGAGTGATAGAGTCAGTGTTGCTGATATCATCAAGAAACTCACTGCTACTAGTCAAATGCAGAGTCCACCTCCATATTTTGCCGATGAAAATGACCATGAAGTGGGTGGTAGTAGCACTACGGCAAGCTCTCCTTGTAGAGATTTTGTGCCAGAACTTCCAGATCAAAGAGCTTTTCCTCAGGTAACTTGTTTACCAAGAATTAGAGGGCGCCAAGCATTTAAAGATTTACTTATGCAGTTGGAGAATGATAGGCATAGGGAGCTTAAGAACCTGGCTGAGCGTGGAACGGTCTCCAAGTTCGCCCAAAGAGGACGCATTCAGGCAGTACTTCGACTTAGATTATTACAACGTGGCGTAGCAGCCAATAATCTATTACAGAAATCAACATCATCTGAAGTAAACAGACAAGTACAACCACATGGATCTGCAATTATGCAACTAAGGGAAAAATTTAGCACTGTCGTTGAACAAAAAAGCACAGTCAAGACAGAAGTAGCTAACACACGAAGTCCTCGTAAGGAGGCAGTGAACACCATCACACAATTGGAAAACTCTTCCGTTGCTGCTCAAATCAGCAAAGACACAAGCAGCCAGGTTCCTCATGGTACTGCCAGTCAATCCTTTGAATCGACACAAAAGTCGGTGTCTCAAACTAGAGAAGAAGATGGTCCAAGTTCAAATGTCATGTCTCAAGAAACATGTTTTAAAGCTCAGCATGATTACTTCAAGGAAACTGCTGAACCAACTACTTCAATGACTGATTCAAATGCTAATGAGAAAGCTGTAGAGGAAAATAACCAGCAATGTGATGAAACCAGTTATGATTGTGCATTAGAAGAGGAAGGAAGTAACCATAATTATGCTGAAAGCAGTTATGAAGAGATAGTGGAAGAGATTTATGATGAAAATCATCATGACTGGATCAGTGAAATTTCTCGACCGAGGAGCTTTTGGGAAGAGAAAAGGCAAGCATGGTATAGAGAAATCCTTGACAATGGTTCTCGAAATAAGGATATTCAAGTGCTTCTTCAAAGAAGAACAGTGTCAACTTTCCTTTCTAGCGACTTCCGCGAAAAAATGGATAGAATGTTGCAATCTCATAAAGGAACACAAACACATATAGTGAATACTTATGATGATGACGAAGACAATGAAGGGTTGATGGCATTTTTCCTAGAACGCCTGCATTCTGCAAGAACTTCTCAAGAAAATGGAATAGAGAGAATGGTAGACGAAGAAAAGGATAGGGTAAATGAGGAAGACAAAGACGAAGAAGAGGAGGATGATAACGAGGAGGAGGACGACGAGGAAGATGATGATGATGATGATGATGAGGAGGAGGAGGAGCGTGAAGAGGAGCAGGGGGGGAAGAGTTTGGCAAGTAGTTTGTATCATGAAGTTGGAGACTATTCTAATCAATCCTCACCATGGAGTTATAGAGACAATGAAGCTGGTGATGATTTTGATAGAGTTGCTTCTACATCTTCACTACCTTATCAATCTCCGTCTTTCTATCACGATAGTCGGCGAAACTCCCCATCTACAAATCAACATTCAATTGAAATGGATATCATATATGATATGAGAGGCCATATGGAGCAACTTCATCAAGAGATGACTGAACTAAGGAAATCAATAAAGAGTTGCTTGGATATGCAGATGCAGATGCAGTTACAACAATCCAATAACCAAAGGGTGCAAACAGTTGAAAAAGAAGAAAAGAAGTCACATAACAAGGCTGGTAAGAAAGGAAACTGCTGCATTTGCTATAAGATGAAAGTTGACTCAGTCCTATACAGGTGCGGACACATGTGTGCATGTCTGAAATGTGCAAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTAAAGCTAAAATAGACGATGTTGTTCGAGTTTATGCCGATGCTTAG 2748 0.4007 MASSGVEIASSAPFGCVLRDRNHRDVCRESSKVKATHVAFQRNIKNFVMDHFNTSFSMADSSTTNENNINSSRNNSNNNNNNNESQMNNNNLAKIRLTRNNHNYDVNNNNNKGDKDESPLASLISAKNSRLLDRWAAKQAREMVSTLQNEAELLSIDNNIPVSSETSSIISDECSSDISNLGASSLVQLWEKRLNNSSGSKPSTPMEKTSPNDGTTNATCNNENVYVVEEQRGLELGECFEGQESFSISSFPDWESDKTGDQSRSCSRDQSRWCSAESDRVSVADIIKKLTATSQMQSPPPYFADENDHEVGGSSTTASSPCRDFVPELPDQRAFPQVTCLPRIRGRQAFKDLLMQLENDRHRELKNLAERGTVSKFAQRGRIQAVLRLRLLQRGVAANNLLQKSTSSEVNRQVQPHGSAIMQLREKFSTVVEQKSTVKTEVANTRSPRKEAVNTITQLENSSVAAQISKDTSSQVPHGTASQSFESTQKSVSQTREEDGPSSNVMSQETCFKAQHDYFKETAEPTTSMTDSNANEKAVEENNQQCDETSYDCALEEEGSNHNYAESSYEEIVEEIYDENHHDWISEISRPRSFWEEKRQAWYREILDNGSRNKDIQVLLQRRTVSTFLSSDFREKMDRMLQSHKGTQTHIVNTYDDDEDNEGLMAFFLERLHSARTSQENGIERMVDEEKDRVNEEDKDEEEEDDNEEEDDEEDDDDDDDEEEEEREEEQGGKSLASSLYHEVGDYSNQSSPWSYRDNEAGDDFDRVASTSSLPYQSPSFYHDSRRNSPSTNQHSIEMDIIYDMRGHMEQLHQEMTELRKSIKSCLDMQMQMQLQQSNNQRVQTVEKEEKKSHNKAGKKGNCCICYKMKVDSVLYRCGHMCACLKCANELQWNSGKCPICKAKIDDVVRVYADA* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0557 915 MobiDBLite consensus disorder prediction 678 740 - -
Tpr5g0557 915 Coils Coil 809 829 - -
Tpr5g0557 915 SUPERFAMILY RING/U-box 862 908 - -
Tpr5g0557 915 MobiDBLite consensus disorder prediction 694 729 - -
Tpr5g0557 915 MobiDBLite consensus disorder prediction 195 214 - -
Tpr5g0557 915 Coils Coil 691 713 - -
Tpr5g0557 915 MobiDBLite consensus disorder prediction 776 795 - -
Tpr5g0557 915 PANTHER BNAC05G24000D PROTEIN 1 914 - -
Tpr5g0557 915 CDD mRING-HC-C3HC5_NEU1 862 902 - -
Tpr5g0557 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 835 913 IPR013083 -
Tpr5g0557 915 MobiDBLite consensus disorder prediction 465 506 - -
Tpr5g0557 915 PANTHER BNAC05G24000D PROTEIN 1 914 - -
Tpr5g0557 915 ProSiteProfiles Zinc finger RING-type profile. 863 902 IPR001841 -
Tpr5g0557 915 Pfam Zinc finger, C3HC4 type (RING finger) 860 908 - -
Tpr5g0557 915 SUPERFAMILY ARM repeat 674 720 IPR016024 -
Tpr5g0557 915 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0557 Tpr-Chr5 8489718 8494774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0557 855 911 C3H Transcription Factor Family AT3G06140 35.088 2.13e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0557 - - mtr:MTR_2g437720 1130.55