Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0517 ATGCCTGATATGGCAAATCTCTCTATCTCGGCGGTACTCAGCTCCACCGTCATCAAACCCAACCCCACTGATGATGCTGCCAACCCTGATTCAGCTGCTGCTGCTGTTGAAGAACCACTACCTAATGGTGGATTTGGTTCCGATAATGGCGCCGATAACGGTACCCATGCTCGGATTTTGAAGAGGAGTCGAAGTTCTCTTCAGAAGACAGACAATGCTAAGAGTTTGTTGGATTGTCTTACAGATCCTCAATCTCTTCCATTTCTCGTTGGTGCTCCCAAGATGGTTGAATGCCTTTTGTGCCACCATTCTGTGTCTCCTGAGGAGGAGTTGCTGTGTTCTGTTCATGGGTGTGGCTCACGCTATCATAAGGAATGTGCAAAAGAAGCCGGCGGGGTTTTACATCTGAAAAAGTTCAAGTGTCCACAACATGCGTGCTTCATTTGCAAGCAAAAGCTGCATTTGCGGTGTGTGCGTTGCCCGGCGGCTTTCCATATTAAATGTGCACCATGGCCAGAAGCTGTGATCCCTCTGAAAGATCATCCCGGGAAAGCTATTTGTTGGAGACATCCTTCTGATTGGCGCCTGGATAAAAAGGAGAAACCTGATACTCCAAAGCAACCTGATACTCCATTGACCGACATTTCGGAAATATTTTGTCGTTTGCCTCTTCCTTTTATTAACGAGGAATTCAAGATCGACTTCACTTGGAAAGACATGGACAATAAGATAGAGCCACCACCATATACACACATAAGGCGCAATATATATCTAGTAAAGAAAAAGCGCAGTGATGCAGATGACGATGCTGGGTGCACAAACTGCAGTTCTGGGTGCTCTGATGATTGCGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGATGCTCTGAAAATTGTAAAAATCGGCCATTTCGCAAGGAGAAAAAGATCAGCGTTGTCAAGACTTTGTTTTGTGGATGGGGAGTTGAGGCTTCTGAAACAATTGAGAAAGGAGAGTTCATAATTGAGTATGTTGGGGAAGTCATTGATGATGCTGAATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGCGTAGAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCTTCACGCTTTTTAAACCATAGCTGTGCTCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACGCGTGTTGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGGGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAGTGCCGCTGCGGAGCACAGAAATGTCAAGGATTTCTAGGTTCAAAAAAGAAAATTAGCAAAGTAGTAAAACTCTGTTGTTGGGGTGCAAAACGTAAGAGAACTTTATGCACTAAACCTGCTGATTTAGCAAAATATTGTATGTAA 1455 0.4364 MPDMANLSISAVLSSTVIKPNPTDDAANPDSAAAAVEEPLPNGGFGSDNGADNGTHARILKRSRSSLQKTDNAKSLLDCLTDPQSLPFLVGAPKMVECLLCHHSVSPEEELLCSVHGCGSRYHKECAKEAGGVLHLKKFKCPQHACFICKQKLHLRCVRCPAAFHIKCAPWPEAVIPLKDHPGKAICWRHPSDWRLDKKEKPDTPKQPDTPLTDISEIFCRLPLPFINEEFKIDFTWKDMDNKIEPPPYTHIRRNIYLVKKKRSDADDDAGCTNCSSGCSDDCVCRVQCISCSKACRCSENCKNRPFRKEKKISVVKTLFCGWGVEASETIEKGEFIIEYVGEVIDDAECEQRLWDMKYKGVENFYMCEIRKDFTIDATFKGNSSRFLNHSCAPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCRCGAQKCQGFLGSKKKISKVVKLCCWGAKRKRTLCTKPADLAKYCM* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0517 484 ProSiteProfiles SET domain profile. 311 428 IPR001214 GO:0005515
Tpr5g0517 484 Gene3D SET domain 228 461 IPR046341 -
Tpr5g0517 484 Pfam SET domain 322 427 IPR001214 GO:0005515
Tpr5g0517 484 ProSiteProfiles Post-SET domain profile. 434 450 IPR003616 -
Tpr5g0517 484 CDD SET_ASHR3-like 312 450 - -
Tpr5g0517 484 SMART PHD_3 97 145 IPR001965 -
Tpr5g0517 484 SMART PHD_3 146 191 IPR001965 -
Tpr5g0517 484 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 483 IPR025787 -
Tpr5g0517 484 SUPERFAMILY SET domain 229 440 IPR046341 -
Tpr5g0517 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 85 473 - -
Tpr5g0517 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 194 IPR013083 -
Tpr5g0517 484 SMART set_7 311 434 IPR001214 GO:0005515
Tpr5g0517 484 PANTHER SET DOMAIN PROTEINS 85 473 - -
Tpr5g0517 484 ProSiteProfiles AWS domain profile. 268 311 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0517 Tpr-Chr5 7699474 7711688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0517 292 449 C2H2 Transcription Factor Family AT2G23740 34.637 1.88e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr5g0517 SET 4.2e-19 No_clan