Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0514 ATGGCTATGATGGCTAATGAATCTCCTCATGTGAAGCCAACCCATTTTTTCAAGATCATATGTGATCAAAACCTTCTTGAGGGAAAGCTTATGATGCCAAGAAAGTTTGTGCAAAAATATGGAGAAGGCTTAACAAAAATTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGTAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGTAGAATATCATTCTCTAGTTCATGGCCATCTTATAGTTTTCAAATATGAAAGAAATTCCCATTTTGAGGTACAGATATTTGATAAGAATGCATGTGAGATAAAATACCCTTTCAAAAGATTTGATGGTAAAAGGGTATTTAATGGTCAAAAGAAGAAAGCTAACTTGTCATTAGAATTTCATCAACCATGTGAAATTGGAAGTAGTAGTGGTGTTAGAGTTGGGAAATTGCCAAAGGTAGAAACTTTGAATCATATTGACAAGAAGTGTAAAGGAAAGCAATTAGTTATTGCTAAGAAAGTCACAGCCCTTGACAGAGCAATCTCTTTCAGAACTTGTAATCCCTCCTTTCATGTTGTCATGTGCCCATCATACATAGATGGTCCTTGTAATCTGAATATACCAAAGGAGTTTGGCAAAATACACTTATCAGATTTAGACAACAAGCAGGGAGATATTCATCTTAGGTTATTGAATGGGAGAGTTTGGCCTCTAAGGTACCTAATTAGGATTTACAATAGAAGAGGATTAAAATATGAAATGCGCTCAAAGGGATGGAAAACATTTGCAGAAGACAATAACTTGAAAGTTGGTGATGTATGCAAATTTGAGCTCTTACCTACTAACACTATAGTTACCTTCACTGTTCACATCTTTAAGGATTAA 900 0.3411 MAMMANESPHVKPTHFFKIICDQNLLEGKLMMPRKFVQKYGEGLTKIIYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFVEYHSLVHGHLIVFKYERNSHFEVQIFDKNACEIKYPFKRFDGKRVFNGQKKKANLSLEFHQPCEIGSSSGVRVGKLPKVETLNHIDKKCKGKQLVIAKKVTALDRAISFRTCNPSFHVVMCPSYIDGPCNLNIPKEFGKIHLSDLDNKQGDIHLRLLNGRVWPLRYLIRIYNRRGLKYEMRSKGWKTFAEDNNLKVGDVCKFELLPTNTIVTFTVHIFKD* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0514 299 ProSiteProfiles B3 DNA-binding domain profile. 195 299 IPR003340 GO:0003677
Tpr5g0514 299 Pfam B3 DNA binding domain 195 298 IPR003340 GO:0003677
Tpr5g0514 299 Pfam B3 DNA binding domain 17 108 IPR003340 GO:0003677
Tpr5g0514 299 SUPERFAMILY DNA-binding pseudobarrel domain 189 298 IPR015300 -
Tpr5g0514 299 SMART B3_2 16 108 IPR003340 GO:0003677
Tpr5g0514 299 SMART B3_2 195 296 IPR003340 GO:0003677
Tpr5g0514 299 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Tpr5g0514 299 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
Tpr5g0514 299 CDD B3_DNA 15 106 IPR003340 GO:0003677
Tpr5g0514 299 Gene3D - 174 299 IPR015300 -
Tpr5g0514 299 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 298 - -
Tpr5g0514 299 CDD B3_DNA 193 298 IPR003340 GO:0003677
Tpr5g0514 299 PANTHER B3 DOMAIN-CONTAINING 9 298 - -
Tpr5g0514 299 Gene3D - 9 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0514 Tpr-Chr5 7622384 7625306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0514 13 290 B3 DNA Binding Superfamily AT3G18990 31.858 5.21e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g0514 B3 2.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0514 - - lja:Lj1g3v3690290.1 333.183