Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0513 ATGTTGATAACTGTAAGAGAAACTTCCTTTGCTTCTTCTTCTTCTTCTTTGTGGCTTAATCTTCATCGTCTCCGTCACATACCATCATCATCTTCATCTTCTTCTTCTTCTCTTCGTGTCCGTAGTAGTAGCAGTAGAACTTCCAACTTCTCTACTCTCTCAACCAGTGACCTAGCGAATTTCGATCCCTTGGGTATTAACCCAGATTTATCTTCTACTTTGAGTTCTACTTGGAAAAATCTAGTGAGTTTGTTTCCACAAGCATATGAAAGCTCTTCAAATACAGAAAAGGAAAAACCCCGAGGAGTAGCAGCTGCTATTGAGGATAGTTCAATTGATTTTGGTGACTTCTTCAAAGGACCGCTGCCAGGGAAGTTTCTTAAGCTTTTAGGGTTTCTTGCATTGTCAAGGCTTGGTGTGTATATACCTCTAGGTGGAGTTAATAGGGAGGCTTTTCTTGGAAATTTGGATCAGAACAGTTTATTAAGCACTCTCGACTCCTTTTCTGGTGGAGGTATTGGTAGACTTGGGATATGCTCTCTTGGTATCGTTCCCTTCATCAATGCACAGATTGTGTTTCAGCTTCTTGCTCAAGTATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTTCAATACACTCGATATGCTTCAGTTGGATTCGCCATTGTACAGGCGATTGGCCAAGTTCTTTTCCTGCGGCCCTATGTAAATGACTTTTCTACAGAGTGGGCTCTTACTTCTGTTATCTTGTTGACACTTGGCTCTGTGTTGACAACGTACATTGGCGAACAAATTACTGAACTGAAACTTGGGAATGGTACCTCTCTTTTGATATTCACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAAGCATTCAATGATGCTAACTATGCTGGACTTGTTACAATCGTCGTGTCCTTCTTTCTGTTGGTAGTTGGAATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTATTAACTATGCTTCTAGATTCACCAGCAGAAGCGGAGGACTTGAAAAATCTGCTTACCTACCGTTTAAGGTAAATAGTTCTGGTGTAATGCCTATCATATTTTCTACATCTTCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTATAAGTGCACTAAAAAATGCTGCAGTGGCATTGAATCCAGGAGGCTCCTTCTATCTTCCGTTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGATCCTGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAAAAGTACAGCTACATTTATTAAAACAGTTCTTAGTCGAATATCAGTTCTCGGTTCAACATTTTTGGCAATTTTGGCTGCTGGACCTGCAGTTGTTGAGCAGACGGCACACTTGACTGCATTCCGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGCGCAACAGATACAGCAAGAAAAGTTCGAGCTGAGATTATATCCCAGAAATACAAAAACATAGAGTTATATGACTTCGATAAGTATTGA 1602 0.4045 MLITVRETSFASSSSSLWLNLHRLRHIPSSSSSSSSSLRVRSSSSRTSNFSTLSTSDLANFDPLGINPDLSSTLSSTWKNLVSLFPQAYESSSNTEKEKPRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFLGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWALTSVILLTLGSVLTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYAGLVTIVVSFFLLVVGIVYVQEAERKIPINYASRFTSRSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKNAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQTAHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFDKY* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0513 533 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 47 531 IPR002208 GO:0015031|GO:0016020
Tpr5g0513 533 Gene3D SecY subunit domain 117 522 IPR023201 -
Tpr5g0513 533 SUPERFAMILY Preprotein translocase SecY subunit 118 516 IPR023201 -
Tpr5g0513 533 ProSitePatterns Protein secY signature 1. 177 196 IPR030659 -
Tpr5g0513 533 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 125 522 IPR002208 GO:0015031|GO:0016020
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 126 144 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 176 196 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 218 241 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 250 275 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 276 299 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 367 386 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 406 428 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 461 479 - -
Tpr5g0513 533 PRINTS Preprotein translocase SecY subunit signature 495 513 - -
Tpr5g0513 533 Pfam SecY 178 509 IPR002208 GO:0015031|GO:0016020
Tpr5g0513 533 ProSitePatterns Protein secY signature 2. 269 286 IPR030659 -
Tpr5g0513 533 Hamap Protein translocase subunit SecY [secY]. 114 526 IPR026593 -
Tpr5g0513 533 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 47 531 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0513 33 533 Chloroplast and Mitochondria Gene Families AT2G18710 81.657 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0513 K10956 - gmx:100810430 827.009