Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0511 ATGAAGGAGAAGAGAGTTAGTAATATTTATATGTTGGATGAATTGGAATCTAGATTTCCCTCATCTTCTGACGCTGAAGCTAAAACACGTCGATTTAGTTTTGATAAATTAAGCCATGATGGTGTCCATGTTAGCAGTAAGACCTCCTCAAGGTCTTTCAAAAGAGGAATAAGAAAAGGATCTGAAGGACTCAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCTGTGTTCCCAGAAGATCTTCAAGTTTCAGAAAACAAGATACTTGATCCTCAAGACAATTTTTTGCTCTTTTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCCGTGTCTGTGGATCCGCTGTTTTTTTATCTCCCTGTCATCAATGATTCGTTACGCTGTCTTGGTATAGACCGAAACTTGGCAATTATAGTTACCACATTGAGGACATTTATCGATGCTTTCTATCTTATACACATGGCTCTCCAATTCCGTACTGCATATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTCATAGATCCGACACAGATAGCAAAGCGATACCTACAGCGATATTTCATCATTGATTTCTTATCAGTGTTGCCCTTACCACAGATTGTGGTGTGGAGATTTCTTCAGAGTTCAAAAGGTTCAGATGTAGTCACAACAAAGCAGGCCTTACTTTTCATTATTTTGCTTCAGTACATTCCAAGATTTCTCCGTATATTACCATTGACTTCTGAACTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCTTGGGCTGGCGCTGCATATTATTTGCTATTGTTCATGCTTGCCAGCCATATAGTCGGGTCGTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGAAGAAAGCTTGTAGTGACAATGGATACAACAAGAAATTCTTGTATTGTGGCAACCAATACATGCAAGGTTATAGTTCCTGGCAGAATAAAAGTGAAGCTATTCTTACATCACAGTGCTCTACAGATAATGATAATCCTCCTTTTGACTATGGGATATTCACACAAGCCTTGAAATCTGGCATTGTTTCATCTAACAAGTTCTTGTCCAAGTACTGTTACTGTTTATGGTGGGGGCTTCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGTACTTACACCGGGGAGGTTATCTTTTCAATAACATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAGAGACGTGATTCAGAACAGTGGATGCATCATCGTCTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTGGCGACACGTGGTGTAGATGAAGAATGTTTGGTACAAAGTCTCCCAAAGGACCTTCAAAGAGACATTAAGCGTCACCTTTGTCTGGCATTAGTTAGAAGGGTTCCTTTATTTGAGAGTATGGATGAGAGATTGCTTGATGCTATATGCGAGAGACTGAAGCCATGTTTATTTACAGAGAATACTTACATTGTTAGGGAAGGAGATCCGGTTGATGAGATGCTCTTCATCATACGTGGTCGTCTCGAGAGTGTTACTACAGATGGTGGGAGGAGTGGCTTTTTTAATCGCAGTTTTCTAAAAGAGGCAGACTTCTGCGGGGAGGAGCTTTTAACCTGGGCGCTTGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAATGGAGGTTGAGGCTTTTGCGTTAACTGCTGAAGAGTTGAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTAGGTATTGCAAACGAAAAACTACGGAGCTTCGTCGAAAGGAAGAACCCGAGGACTCAGAAGGAACTCGCAGCAATGTTGGTGGCAGTTCATACAGTCTTGGTGCGACATTATTAGCTTCAAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATCGGATTGTGAAGAGTTCCAGGGACTTGGTCAAACTACAGAAACCTTCTGAGCCCGACTTCACTTCTGATGATATGTAA 2175 0.4211 MKEKRVSNIYMLDELESRFPSSSDAEAKTRRFSFDKLSHDGVHVSSKTSSRSFKRGIRKGSEGLKSIGRSLGFGVSKAVFPEDLQVSENKILDPQDNFLLFWNKLFVISCILAVSVDPLFFYLPVINDSLRCLGIDRNLAIIVTTLRTFIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLQRYFIIDFLSVLPLPQIVVWRFLQSSKGSDVVTTKQALLFIILLQYIPRFLRILPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWKKACSDNGYNKKFLYCGNQYMQGYSSWQNKSEAILTSQCSTDNDNPPFDYGIFTQALKSGIVSSNKFLSKYCYCLWWGLQNLSTLGQGLQTSTYTGEVIFSITLAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEECLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKTTELRRKEEPEDSEGTRSNVGGSSYSLGATLLASRFAANALRGVHRNRIVKSSRDLVKLQKPSEPDFTSDDM* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0511 724 Pfam Cyclic nucleotide-binding domain 519 608 IPR000595 -
Tpr5g0511 724 SUPERFAMILY Voltage-gated potassium channels 93 420 - -
Tpr5g0511 724 SUPERFAMILY cAMP-binding domain-like 427 618 IPR018490 -
Tpr5g0511 724 CDD CAP_ED 498 629 IPR000595 -
Tpr5g0511 724 Gene3D - 104 423 - -
Tpr5g0511 724 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 9 721 - -
Tpr5g0511 724 ProSiteProfiles cAMP/cGMP binding motif profile. 498 582 IPR000595 -
Tpr5g0511 724 SMART cnmp_10 498 629 IPR000595 -
Tpr5g0511 724 Pfam Ion transport protein 101 424 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr5g0511 724 Gene3D Helix hairpin bin 426 489 - -
Tpr5g0511 724 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 721 - -
Tpr5g0511 724 Gene3D Jelly Rolls 496 616 IPR014710 -
Tpr5g0511 724 ProSiteProfiles IQ motif profile. 634 663 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0511 Tpr-Chr5 7598061 7605371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0511 18 722 Ion Channels AT5G57940 78.955 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0511 K05391 - gmx:100820202 1258.05