Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0508 ATGGTTCATTCTAACCCAATTAACGATGACCCATCAATCATTCAATCGTTCTCAACCGATGCACCTAATGATGTAGAGAATGATGTGAAGTTGAGTTCTAAGGACCAGAGAGATGCTCTTCCAGGTGAGCCGATGTGTATTATATGTGGCCGCTATGGTGAGTATATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGTAAACAATCGGTACTATGTCGAATTTCCAAATCCTCATCTCATGTTGGTGGTCTTCCGCCACCTAAAAAACTACCTGCAGCTGATGAGTGCTTTTATGTTAGCGATACTAATAACAAATTAGGAATGGCGTCTTTAGGAGGTGATCAGATTCAGGCTGAATTGCTTCGAAAGAAACTTGACATTCATGTGAAGGGTGTTGTTTCGGCACCGGTTATGTCGTTCACTTCATGTAACCTCCCCGACAAACTCCTCCACAACATAGAAGCAGCTGGATATGAGATGCCTACGCCTGTCCAAATGCAAGCAATCCCTGCTGCTTCGATGGGGAAGAACATGATTGTTTTGGCCGATACAGGATCCGGAAAGTCAGCTTCGTTTCTTATTCCAATAATTTCTCGTTGTGTAAGTCATCGTTTGACTTATGTTTCAGATAAGAAAAAGCCTTTAGCTATGGTGTTAACACCTACGAGAGAGCTCAGTATACAGGTTGAAGAGCACGCAAAATTGCTTGGAAAAGGGTTGCCGTTTAAAACCGCACTTGTGGTTGGCGGCGATGCAATGGCTAGGCAACTCTACCGCATTCAGCAAGGAGTCGAATTGATTGTTGGAACACCAGGAAGGCTCGTTGATCTTTTAACGAAGCACGAGATTGACTTAGATGACATAACAACTTTTGTTGTCGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGATCAGGTCTTACAGATATGCACGGCTTTGTCACAACCTCAGGTCTTAATGTTTTCGGCAACAATGTCCGATGATTTAGAGAAAATGGCGAACTCTCTGGCAAAGGATACAGTGGTGATAACCGTTGGTGAACCTAACAGACCAAATAAAGCCGTGAAGCAGCTAGCTATTTGGGTCGAATCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAGCCACCTATTGTAATATACGTCGGCTCGAGACTTGGGGCAGATCTCCTGGCAAATGCAATTACAGTTTCAACAGGAATTAAATCTGTGTCAATTCACGGCGAGAAGTCTATGACAGTAAGGAGAGAAATAATGCAGTCATTTATGGTCGGAGAGTTCCCCGTGATTGTGGCTACCGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGCGTAAGACAAGTGATTGTATTCGACATGCCGAATTCCATTAAGGAATATGTACATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAACGACGAGAATAGGAATGTTTTCGCAGAGTTAGTTGATGTACTAAAGTCGGGTGCAGCGGCTATACCTCGGGAGCTTATGAATTCACAGTATACCACAAGATTTTTCTCTGGTGGCAAAGGTTCAAAGAAGAGAAAGCACAAATGA 1623 0.4295 MVHSNPINDDPSIIQSFSTDAPNDVENDVKLSSKDQRDALPGEPMCIICGRYGEYICDETDDDVCSLECKQSVLCRISKSSSHVGGLPPPKKLPAADECFYVSDTNNKLGMASLGGDQIQAELLRKKLDIHVKGVVSAPVMSFTSCNLPDKLLHNIEAAGYEMPTPVQMQAIPAASMGKNMIVLADTGSGKSASFLIPIISRCVSHRLTYVSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDITTFVVDEVDCMLQRGFRDQVLQICTALSQPQVLMFSATMSDDLEKMANSLAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPIVIYVGSRLGADLLANAITVSTGIKSVSIHGEKSMTVRREIMQSFMVGEFPVIVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENRNVFAELVDVLKSGAAAIPRELMNSQYTTRFFSGGKGSKKRKHK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0508 540 Gene3D - 26 83 - -
Tpr5g0508 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 497 IPR027417 -
Tpr5g0508 540 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Tpr5g0508 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Tpr5g0508 540 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 527 - -
Tpr5g0508 540 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 26 527 - -
Tpr5g0508 540 SMART ultradead3 160 363 IPR014001 -
Tpr5g0508 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Tpr5g0508 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 351 IPR027417 -
Tpr5g0508 540 Gene3D - 354 539 IPR027417 -
Tpr5g0508 540 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Tpr5g0508 540 MobiDBLite consensus disorder prediction 1 21 - -
Tpr5g0508 540 CDD SF2_C_DEAD 360 492 - -
Tpr5g0508 540 SMART helicmild6 401 483 IPR001650 -
Tpr5g0508 540 Gene3D - 116 352 IPR027417 -
Tpr5g0508 540 Pfam HIT zinc finger 44 70 IPR007529 -
Tpr5g0508 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0508 Tpr-Chr5 7580612 7583299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0508 142 503 Eukaryotic Initiation Factors Gene Family AT1G72730 33.243 7.82e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0508 K19466 - gmx:100781473 819.305