Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0498 ATGGAAGAATCTATTGTACTTAACAAAAGTGATGAAGCTCTTGATTTACCTGCTGGTTTCAGATTCCACCCTAATGATGATGAAATCATTACTTGTTATTTAATTAACAAGGTTTTGAATAGTAGCTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAAGTGTGAGCCATGGGATTTACCAAAGAAAGCTAAGATGGGTGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAGTATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCTGGATATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAAGTAACCAACTTATTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTTATGCATGAATTTAGATTGGATGGAAAATTAGCAACTTGCAACCTTCCTAAGGATGCTAAGGATGAATGGGTTGTGTCAAGGATTTTCAACAAGAACATCAACAATGAAGTTAAAAGGACTACTTCAATTTCCAATCTTTTAAGGATAAACTCAATAAGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTGGAACCTCCTTTTAGCAATAATACAATTATTGATCATCATGACTTCAAAGGCACCAATTCATCACCTTCATCATCAAATGGTTACTATTTTCCAAGCTACTTAATCAACAATGAAATTAATCATGTCACAAACCAAGGAAATTTCAATAATCCAATGCAAAAAAGCACATTTTCATCACATCAACCTCAACCTCAACCTCAAATCCAAATTCCAAAAGCACCAATGAACAAAAATATGTTAACAAATTTATATTCTTATATGAATCAAGGGAATAATAATAGCAATGGTTACATTTATGGATTGGAAAATAAAGAGTGTAAGATGGAGCAATTCTCTACCAACAATTCTATGGTGAGTGTTTCACAAGACACATGTTTGAGCAATGACATAAACAATGACATATCTTCTGTGGTTTCAAAGCAAGAAAATATGGGAATGGATACAACATTGTATGAAGAACTTGAGTGCCCTTCATCAATTGGTCCCCTCTCAAATTTTGAATATTTGTGGGATAACTATTGA 1131 0.336 MEESIVLNKSDEALDLPAGFRFHPNDDEIITCYLINKVLNSSFSAIAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLIGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGKLATCNLPKDAKDEWVVSRIFNKNINNEVKRTTSISNLLRINSISDDLLDFSSLPPLVEPPFSNNTIIDHHDFKGTNSSPSSSNGYYFPSYLINNEINHVTNQGNFNNPMQKSTFSSHQPQPQPQIQIPKAPMNKNMLTNLYSYMNQGNNNSNGYIYGLENKECKMEQFSTNNSMVSVSQDTCLSNDINNDISSVVSKQENMGMDTTLYEELECPSSIGPLSNFEYLWDNY* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0498 376 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Tpr5g0498 376 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Tpr5g0498 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 328 - -
Tpr5g0498 376 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Tpr5g0498 376 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Tpr5g0498 376 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 8 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0498 Tpr-Chr5 7436259 7438823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0498 1 349 NAC Transcription Factor Family AT5G18270 50.829 3.23e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g0498 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0498 - - cam:101514407 545.814