Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0496 ATGTACTTCCACCATCAACAACAACAAGCAAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAAGTGGAGATTCAGGACTTGTCCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGAACGTTTCATTGAAGCAGTCAATCAACTTGGAGGATCAGATAAAGCTACACCTAAAACAGTATTGAAACTTATGGGGATTCCTGGACTTACATTATACCATTTAAAAAGTCACCTACAGAAATACAGGATCAGTAAACATGGGAATGGACATGCTAACATTAGCAGCAGTAAAATTGGAGCACCAACCACAGAATTAGTAGAAAGCAGAATGTCAGAATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGTCTCCAAACAAACAAAAATTCAGAAATAAATGAAGCATTGAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGGTACAACGACACTTACAATTAAGGATAGAGGCTCAAGGAAAGTACCTTCAATCAGTGCTTGAAAAAGCTAAGGAGACACTAGGAAATCAAAATTTAGGTACAATGGGACTTGATGCTGCAAAGGTTCAACTATCTGAATTAGCATCAAGAGTATCCACAGAAAACCTTGATACTAAATTTTCAGAACTAAAAGAATTGAATGTACTTTGGCCTCAACAAACACATGAAGGTGAAGCCATTGATTATTCAATGTCAAGTTTCTTAACTAATAGTGATGAGTCTCAAAGAGATCAAGAAATACATAACAAGGGCATGAATTTTAGACCCTGTAATGGCACATTTTGTGAAGAAGTGAAGGAGAATACAATGTTTCTTTCCTCATCAAATGATAAAGTACTAGATGGATCAGGTGAAGTACCAAAACAAACTTCAAGCCTCTTATCAATGAATATAGGAGTTCATGAAGAAGAAAACTTTTGGAGAAGAAATAATTCAAAGGAAGATTTAAAGGGTGAAGAATGGAAAAGAAGAAAAAGTATTGAAACTAGTGGAGTTCAACTAAAATTGAACAGTGACAAAATTTCTCAAGATTATAGATTGGCTAACTTTGAAGTTAAATTGGACTTGAATTCTCATGATGATCATGATGCTTCTCAATGCCAAAAATTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1173 0.3529 MYFHHQQQQARNMHALRMHMQGSGDSGLVLSTDAKPRLKWTADLHERFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKHGNGHANISSSKIGAPTTELVESRMSESSGIHMKDLSIGLQTNKNSEINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAKETLGNQNLGTMGLDAAKVQLSELASRVSTENLDTKFSELKELNVLWPQQTHEGEAIDYSMSSFLTNSDESQRDQEIHNKGMNFRPCNGTFCEEVKENTMFLSSSNDKVLDGSGEVPKQTSSLLSMNIGVHEEENFWRRNNSKEDLKGEEWKRRKSIETSGVQLKLNSDKISQDYRLANFEVKLDLNSHDDHDASQCQKFDLNGFSWNC* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0496 390 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 389 - -
Tpr5g0496 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Tpr5g0496 390 Gene3D - 34 93 - -
Tpr5g0496 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 389 IPR044848 GO:0003700
Tpr5g0496 390 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Tpr5g0496 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Tpr5g0496 390 Coils Coil 140 160 - -
Tpr5g0496 390 Pfam Myb-like DNA-binding domain 37 88 IPR001005 -
Tpr5g0496 390 Pfam MYB-CC type transfactor, LHEQLE motif 138 183 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0496 Tpr-Chr5 7406782 7410899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0496 67 389 G2-like Transcription Factor Family AT3G04030 44.380 4.66e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr5g0496 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0496 - - mtr:MTR_6g032990 671.774